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ZNF41 (zinc finger protein 41)

Identity

Alias_symbol (synonym)MGC8941
MRX89
Other alias
HGNC (Hugo) ZNF41
LocusID (NCBI) 7592
Atlas_Id 76139
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 47305561 and ends at 47342345 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SIPA1L2 (1q42.2) / ZNF41 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF41   13107
Cards
Entrez_Gene (NCBI)ZNF41  7592  zinc finger protein 41
AliasesMRX89
GeneCards (Weizmann)ZNF41
Ensembl hg19 (Hinxton)ENSG00000147124 [Gene_View]  chrX:47305561-47342345 [Contig_View]  ZNF41 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147124 [Gene_View]  chrX:47305561-47342345 [Contig_View]  ZNF41 [Vega]
ICGC DataPortalENSG00000147124
TCGA cBioPortalZNF41
AceView (NCBI)ZNF41
Genatlas (Paris)ZNF41
WikiGenes7592
SOURCE (Princeton)ZNF41
Genetics Home Reference (NIH)ZNF41
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF41  -     chrX:47305561-47342345 -  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF41  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblZNF41 - Xp11.23 [CytoView hg19]  ZNF41 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIZNF41 [Mapview hg19]  ZNF41 [Mapview hg38]
OMIM314995   
Gene and transcription
Genbank (Entrez)AB209520 AJ010017 AJ010018 AJ010019 AJ010020
RefSeq transcript (Entrez)NM_007130 NM_153380
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_008238 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)ZNF41
Cluster EST : UnigeneHs.737678 [ NCBI ]
CGAP (NCI)Hs.737678
Alternative Splicing GalleryENSG00000147124
Gene ExpressionZNF41 [ NCBI-GEO ]   ZNF41 [ EBI - ARRAY_EXPRESS ]   ZNF41 [ SEEK ]   ZNF41 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7592
GTEX Portal (Tissue expression)ZNF41
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51814   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51814  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51814
Splice isoforms : SwissVarP51814
PhosPhoSitePlusP51814
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF41
DMDM Disease mutations7592
Blocks (Seattle)ZNF41
SuperfamilyP51814
Human Protein AtlasENSG00000147124
Peptide AtlasP51814
HPRD02447
IPIIPI00020900   IPI00221192   IPI00221194   IPI00221195   IPI00221196   IPI00221197   IPI00221198   IPI00221200   
Protein Interaction databases
DIP (DOE-UCLA)P51814
IntAct (EBI)P51814
FunCoupENSG00000147124
BioGRIDZNF41
STRING (EMBL)ZNF41
ZODIACZNF41
Ontologies - Pathways
QuickGOP51814
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF41
Atlas of Cancer Signalling NetworkZNF41
Wikipedia pathwaysZNF41
Orthology - Evolution
OrthoDB7592
GeneTree (enSembl)ENSG00000147124
Phylogenetic Trees/Animal Genes : TreeFamZNF41
HOVERGENP51814
HOGENOMP51814
Homologs : HomoloGeneZNF41
Homology/Alignments : Family Browser (UCSC)ZNF41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF41
dbVarZNF41
ClinVarZNF41
1000_GenomesZNF41 
Exome Variant ServerZNF41
ExAC (Exome Aggregation Consortium)ZNF41 (select the gene name)
Genetic variants : HAPMAP7592
Genomic Variants (DGV)ZNF41 [DGVbeta]
DECIPHER (Syndromes)X:47305561-47342345  ENSG00000147124
CONAN: Copy Number AnalysisZNF41 
Mutations
ICGC Data PortalZNF41 
TCGA Data PortalZNF41 
Broad Tumor PortalZNF41
OASIS PortalZNF41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZNF41
DgiDB (Drug Gene Interaction Database)ZNF41
DoCM (Curated mutations)ZNF41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF41 (select a term)
intoGenZNF41
Cancer3DZNF41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM314995   
Orphanet3256   
MedgenZNF41
Genetic Testing Registry ZNF41
NextProtP51814 [Medical]
TSGene7592
GENETestsZNF41
Huge Navigator ZNF41 [HugePedia]
snp3D : Map Gene to Disease7592
BioCentury BCIQZNF41
ClinGenZNF41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7592
Chemical/Pharm GKB GenePA37682
Clinical trialZNF41
Miscellaneous
canSAR (ICR)ZNF41 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF41
EVEXZNF41
GoPubMedZNF41
iHOPZNF41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:59 CET 2017

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