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ZNF415 (zinc finger protein 415)

Identity

Other aliasZfLp
HGNC (Hugo) ZNF415
LocusID (NCBI) 55786
Atlas_Id 76141
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53107879 and ends at 53132918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF415 (19q13.42) / SMG9 (19q13.31)ZNF415 (19q13.42) / ZNF415 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF415   20636
Cards
Entrez_Gene (NCBI)ZNF415  55786  zinc finger protein 415
AliasesZfLp
GeneCards (Weizmann)ZNF415
Ensembl hg19 (Hinxton)ENSG00000170954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170954 [Gene_View]  chr19:53107879-53132918 [Contig_View]  ZNF415 [Vega]
ICGC DataPortalENSG00000170954
TCGA cBioPortalZNF415
AceView (NCBI)ZNF415
Genatlas (Paris)ZNF415
WikiGenes55786
SOURCE (Princeton)ZNF415
Genetics Home Reference (NIH)ZNF415
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF415  -     chr19:53107879-53132918 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF415  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF415 - 19q13.42 [CytoView hg19]  ZNF415 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF415 [Mapview hg19]  ZNF415 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA125787 AF038179 AK002053 AK095504 AL534796
RefSeq transcript (Entrez)NM_001136038 NM_001164309 NM_001330759 NM_001330766 NM_018355
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF415
Cluster EST : UnigeneHs.147765 [ NCBI ]
CGAP (NCI)Hs.147765
Alternative Splicing GalleryENSG00000170954
Gene ExpressionZNF415 [ NCBI-GEO ]   ZNF415 [ EBI - ARRAY_EXPRESS ]   ZNF415 [ SEEK ]   ZNF415 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF415 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55786
GTEX Portal (Tissue expression)ZNF415
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09FC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ09FC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ09FC8
Splice isoforms : SwissVarQ09FC8
PhosPhoSitePlusQ09FC8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_BED    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_BED (SM00614)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF415
DMDM Disease mutations55786
Blocks (Seattle)ZNF415
SuperfamilyQ09FC8
Human Protein AtlasENSG00000170954
Peptide AtlasQ09FC8
HPRD18340
IPIIPI00431847   IPI00845330   IPI00845392   IPI00845500   IPI00181298   IPI01012753   
Protein Interaction databases
DIP (DOE-UCLA)Q09FC8
IntAct (EBI)Q09FC8
FunCoupENSG00000170954
BioGRIDZNF415
STRING (EMBL)ZNF415
ZODIACZNF415
Ontologies - Pathways
QuickGOQ09FC8
Ontology : AmiGOfibrillar center  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  microtubule cytoskeleton  metal ion binding  
Ontology : EGO-EBIfibrillar center  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  microtubule cytoskeleton  metal ion binding  
NDEx NetworkZNF415
Atlas of Cancer Signalling NetworkZNF415
Wikipedia pathwaysZNF415
Orthology - Evolution
OrthoDB55786
GeneTree (enSembl)ENSG00000170954
Phylogenetic Trees/Animal Genes : TreeFamZNF415
HOVERGENQ09FC8
HOGENOMQ09FC8
Homologs : HomoloGeneZNF415
Homology/Alignments : Family Browser (UCSC)ZNF415
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF415 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF415
dbVarZNF415
ClinVarZNF415
1000_GenomesZNF415 
Exome Variant ServerZNF415
ExAC (Exome Aggregation Consortium)ZNF415 (select the gene name)
Genetic variants : HAPMAP55786
Genomic Variants (DGV)ZNF415 [DGVbeta]
DECIPHERZNF415 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF415 
Mutations
ICGC Data PortalZNF415 
TCGA Data PortalZNF415 
Broad Tumor PortalZNF415
OASIS PortalZNF415 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF415  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF415
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF415
DgiDB (Drug Gene Interaction Database)ZNF415
DoCM (Curated mutations)ZNF415 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF415 (select a term)
intoGenZNF415
Cancer3DZNF415(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF415
Genetic Testing Registry ZNF415
NextProtQ09FC8 [Medical]
TSGene55786
GENETestsZNF415
Huge Navigator ZNF415 [HugePedia]
snp3D : Map Gene to Disease55786
BioCentury BCIQZNF415
ClinGenZNF415
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55786
Chemical/Pharm GKB GenePA134984602
Clinical trialZNF415
Miscellaneous
canSAR (ICR)ZNF415 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF415
EVEXZNF415
GoPubMedZNF415
iHOPZNF415
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:57 CEST 2017

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