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ZNF415 (zinc finger protein 415)

Identity

Other aliasPact
ZfLp
HGNC (Hugo) ZNF415
LocusID (NCBI) 55786
Atlas_Id 76141
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53107879 and ends at 53132918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF415 (19q13.42) / SMG9 (19q13.31)ZNF415 (19q13.42) / ZNF415 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF415   20636
Cards
Entrez_Gene (NCBI)ZNF415  55786  zinc finger protein 415
AliasesPact; ZfLp
GeneCards (Weizmann)ZNF415
Ensembl hg19 (Hinxton)ENSG00000170954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170954 [Gene_View]  ENSG00000170954 [Sequence]  chr19:53107879-53132918 [Contig_View]  ZNF415 [Vega]
ICGC DataPortalENSG00000170954
TCGA cBioPortalZNF415
AceView (NCBI)ZNF415
Genatlas (Paris)ZNF415
WikiGenes55786
SOURCE (Princeton)ZNF415
Genetics Home Reference (NIH)ZNF415
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF415  -     chr19:53107879-53132918 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF415  -     19q13.42   [Description]    (hg19-Feb_2009)
GoldenPathZNF415 - 19q13.42 [CytoView hg19]  ZNF415 - 19q13.42 [CytoView hg38]
ImmunoBaseENSG00000170954
Mapping of homologs : NCBIZNF415 [Mapview hg19]  ZNF415 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA125787 AB480247 AF038179 AK002053 AK095504
RefSeq transcript (Entrez)NM_001136038 NM_001164309 NM_001330759 NM_001330766 NM_001352130 NM_001352131 NM_001352132 NM_001352133 NM_001352134 NM_001352135 NM_001352136 NM_001352137 NM_001352138 NM_001352139 NM_001352140 NM_001352141 NM_001352142 NM_001352143 NM_001352144 NM_001352146 NM_001352147 NM_001352148 NM_001352149 NM_001352150 NM_001352151 NM_018355
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF415
Cluster EST : UnigeneHs.147765 [ NCBI ]
CGAP (NCI)Hs.147765
Alternative Splicing GalleryENSG00000170954
Gene ExpressionZNF415 [ NCBI-GEO ]   ZNF415 [ EBI - ARRAY_EXPRESS ]   ZNF415 [ SEEK ]   ZNF415 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF415 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55786
GTEX Portal (Tissue expression)ZNF415
Human Protein AtlasENSG00000170954-ZNF415 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09FC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ09FC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ09FC8
Splice isoforms : SwissVarQ09FC8
PhosPhoSitePlusQ09FC8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_BED    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_BED (SM00614)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF415
DMDM Disease mutations55786
Blocks (Seattle)ZNF415
SuperfamilyQ09FC8
Human Protein Atlas [tissue]ENSG00000170954-ZNF415 [tissue]
Peptide AtlasQ09FC8
HPRD18340
IPIIPI00431847   IPI00845330   IPI00845392   IPI00845500   IPI00181298   IPI01012753   
Protein Interaction databases
DIP (DOE-UCLA)Q09FC8
IntAct (EBI)Q09FC8
FunCoupENSG00000170954
BioGRIDZNF415
STRING (EMBL)ZNF415
ZODIACZNF415
Ontologies - Pathways
QuickGOQ09FC8
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  fibrillar center  DNA binding  protein binding  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  microtubule cytoskeleton  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  fibrillar center  DNA binding  protein binding  nucleus  cytoplasm  regulation of transcription by RNA polymerase II  microtubule cytoskeleton  metal ion binding  
NDEx NetworkZNF415
Atlas of Cancer Signalling NetworkZNF415
Wikipedia pathwaysZNF415
Orthology - Evolution
OrthoDB55786
GeneTree (enSembl)ENSG00000170954
Phylogenetic Trees/Animal Genes : TreeFamZNF415
HOGENOMQ09FC8
Homologs : HomoloGeneZNF415
Homology/Alignments : Family Browser (UCSC)ZNF415
Gene fusions - Rearrangements
Fusion : QuiverZNF415
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF415 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF415
dbVarZNF415
ClinVarZNF415
1000_GenomesZNF415 
Exome Variant ServerZNF415
ExAC (Exome Aggregation Consortium)ENSG00000170954
GNOMAD BrowserENSG00000170954
Varsome BrowserZNF415
Genetic variants : HAPMAP55786
Genomic Variants (DGV)ZNF415 [DGVbeta]
DECIPHERZNF415 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF415 
Mutations
ICGC Data PortalZNF415 
TCGA Data PortalZNF415 
Broad Tumor PortalZNF415
OASIS PortalZNF415 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF415  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF415
Mutations and Diseases : HGMDZNF415
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF415
DgiDB (Drug Gene Interaction Database)ZNF415
DoCM (Curated mutations)ZNF415 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF415 (select a term)
intoGenZNF415
Cancer3DZNF415(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF415
MedgenZNF415
Genetic Testing Registry ZNF415
NextProtQ09FC8 [Medical]
TSGene55786
GENETestsZNF415
Target ValidationZNF415
Huge Navigator ZNF415 [HugePedia]
snp3D : Map Gene to Disease55786
BioCentury BCIQZNF415
ClinGenZNF415
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55786
Chemical/Pharm GKB GenePA134984602
Clinical trialZNF415
Miscellaneous
canSAR (ICR)ZNF415 (select the gene name)
DataMed IndexZNF415
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF415
EVEXZNF415
GoPubMedZNF415
iHOPZNF415
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:14:05 CEST 2019

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