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ZNF416 (zinc finger protein 416)

Identity

Alias_symbol (synonym)FLJ20557
Other alias-
HGNC (Hugo) ZNF416
LocusID (NCBI) 55659
Atlas_Id 76142
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57571566 and ends at 57578875 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF416   20645
Cards
Entrez_Gene (NCBI)ZNF416  55659  zinc finger protein 416
Aliases
GeneCards (Weizmann)ZNF416
Ensembl hg19 (Hinxton)ENSG00000083817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083817 [Gene_View]  chr19:57571566-57578875 [Contig_View]  ZNF416 [Vega]
ICGC DataPortalENSG00000083817
TCGA cBioPortalZNF416
AceView (NCBI)ZNF416
Genatlas (Paris)ZNF416
WikiGenes55659
SOURCE (Princeton)ZNF416
Genetics Home Reference (NIH)ZNF416
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF416  -     chr19:57571566-57578875 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF416  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF416 - 19q13.43 [CytoView hg19]  ZNF416 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF416 [Mapview hg19]  ZNF416 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000564 BC000130 EU446818
RefSeq transcript (Entrez)NM_017879
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF416
Cluster EST : UnigeneHs.247711 [ NCBI ]
CGAP (NCI)Hs.247711
Alternative Splicing GalleryENSG00000083817
Gene ExpressionZNF416 [ NCBI-GEO ]   ZNF416 [ EBI - ARRAY_EXPRESS ]   ZNF416 [ SEEK ]   ZNF416 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF416 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55659
GTEX Portal (Tissue expression)ZNF416
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWM5
Splice isoforms : SwissVarQ9BWM5
PhosPhoSitePlusQ9BWM5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF416
DMDM Disease mutations55659
Blocks (Seattle)ZNF416
SuperfamilyQ9BWM5
Human Protein AtlasENSG00000083817
Peptide AtlasQ9BWM5
HPRD07926
IPIIPI00020818   IPI00478852   IPI00942057   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWM5
IntAct (EBI)Q9BWM5
FunCoupENSG00000083817
BioGRIDZNF416
STRING (EMBL)ZNF416
ZODIACZNF416
Ontologies - Pathways
QuickGOQ9BWM5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF416
Atlas of Cancer Signalling NetworkZNF416
Wikipedia pathwaysZNF416
Orthology - Evolution
OrthoDB55659
GeneTree (enSembl)ENSG00000083817
Phylogenetic Trees/Animal Genes : TreeFamZNF416
HOVERGENQ9BWM5
HOGENOMQ9BWM5
Homologs : HomoloGeneZNF416
Homology/Alignments : Family Browser (UCSC)ZNF416
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF416 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF416
dbVarZNF416
ClinVarZNF416
1000_GenomesZNF416 
Exome Variant ServerZNF416
ExAC (Exome Aggregation Consortium)ZNF416 (select the gene name)
Genetic variants : HAPMAP55659
Genomic Variants (DGV)ZNF416 [DGVbeta]
DECIPHERZNF416 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF416 
Mutations
ICGC Data PortalZNF416 
TCGA Data PortalZNF416 
Broad Tumor PortalZNF416
OASIS PortalZNF416 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF416  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF416
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF416
DgiDB (Drug Gene Interaction Database)ZNF416
DoCM (Curated mutations)ZNF416 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF416 (select a term)
intoGenZNF416
Cancer3DZNF416(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF416
Genetic Testing Registry ZNF416
NextProtQ9BWM5 [Medical]
TSGene55659
GENETestsZNF416
Target ValidationZNF416
Huge Navigator ZNF416 [HugePedia]
snp3D : Map Gene to Disease55659
BioCentury BCIQZNF416
ClinGenZNF416
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55659
Chemical/Pharm GKB GenePA134905500
Clinical trialZNF416
Miscellaneous
canSAR (ICR)ZNF416 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF416
EVEXZNF416
GoPubMedZNF416
iHOPZNF416
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:24 CEST 2017

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