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ZNF417 (zinc finger protein 417)

Identity

Alias_symbol (synonym)MGC34079
Other alias-
HGNC (Hugo) ZNF417
LocusID (NCBI) 147687
Atlas_Id 76143
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57905774 and ends at 57916616 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF417   20646
Cards
Entrez_Gene (NCBI)ZNF417  147687  zinc finger protein 417
Aliases
GeneCards (Weizmann)ZNF417
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:57905774-57916616 [Contig_View]  ZNF417 [Vega]
TCGA cBioPortalZNF417
AceView (NCBI)ZNF417
Genatlas (Paris)ZNF417
WikiGenes147687
SOURCE (Princeton)ZNF417
Genetics Home Reference (NIH)ZNF417
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF417  -     chr19:57905774-57916616 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF417  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF417 - 19q13.43 [CytoView hg19]  ZNF417 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF417 [Mapview hg19]  ZNF417 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293789 BC025783 BC103757 BP358797 DB097766
RefSeq transcript (Entrez)NM_001297734 NM_152475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF417
Cluster EST : UnigeneHs.567710 [ NCBI ]
CGAP (NCI)Hs.567710
Gene ExpressionZNF417 [ NCBI-GEO ]   ZNF417 [ EBI - ARRAY_EXPRESS ]   ZNF417 [ SEEK ]   ZNF417 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF417 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147687
GTEX Portal (Tissue expression)ZNF417
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAU3
Splice isoforms : SwissVarQ8TAU3
PhosPhoSitePlusQ8TAU3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF417
DMDM Disease mutations147687
Blocks (Seattle)ZNF417
SuperfamilyQ8TAU3
Peptide AtlasQ8TAU3
HPRD18341
IPIIPI00290557   IPI01015936   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAU3
IntAct (EBI)Q8TAU3
BioGRIDZNF417
STRING (EMBL)ZNF417
ZODIACZNF417
Ontologies - Pathways
QuickGOQ8TAU3
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF417
Atlas of Cancer Signalling NetworkZNF417
Wikipedia pathwaysZNF417
Orthology - Evolution
OrthoDB147687
Phylogenetic Trees/Animal Genes : TreeFamZNF417
HOVERGENQ8TAU3
HOGENOMQ8TAU3
Homologs : HomoloGeneZNF417
Homology/Alignments : Family Browser (UCSC)ZNF417
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF417 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF417
dbVarZNF417
ClinVarZNF417
1000_GenomesZNF417 
Exome Variant ServerZNF417
ExAC (Exome Aggregation Consortium)ZNF417 (select the gene name)
Genetic variants : HAPMAP147687
Genomic Variants (DGV)ZNF417 [DGVbeta]
DECIPHERZNF417 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF417 
Mutations
ICGC Data PortalZNF417 
TCGA Data PortalZNF417 
Broad Tumor PortalZNF417
OASIS PortalZNF417 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF417  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF417
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF417
DgiDB (Drug Gene Interaction Database)ZNF417
DoCM (Curated mutations)ZNF417 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF417 (select a term)
intoGenZNF417
Cancer3DZNF417(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF417
Genetic Testing Registry ZNF417
NextProtQ8TAU3 [Medical]
TSGene147687
GENETestsZNF417
Target ValidationZNF417
Huge Navigator ZNF417 [HugePedia]
snp3D : Map Gene to Disease147687
BioCentury BCIQZNF417
ClinGenZNF417
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147687
Chemical/Pharm GKB GenePA134863699
Clinical trialZNF417
Miscellaneous
canSAR (ICR)ZNF417 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF417
EVEXZNF417
GoPubMedZNF417
iHOPZNF417
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:44 CEST 2017

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