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ZNF418 (zinc finger protein 418)

Identity

Alias_symbol (synonym)KIAA1956
FLJ31551
Other alias-
HGNC (Hugo) ZNF418
LocusID (NCBI) 147686
Atlas_Id 76144
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57921884 and ends at 57935387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF418 (19q13.43) / PRKCZ (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF418   20647
Cards
Entrez_Gene (NCBI)ZNF418  147686  zinc finger protein 418
Aliases
GeneCards (Weizmann)ZNF418
Ensembl hg19 (Hinxton)ENSG00000196724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196724 [Gene_View]  chr19:57921884-57935387 [Contig_View]  ZNF418 [Vega]
ICGC DataPortalENSG00000196724
TCGA cBioPortalZNF418
AceView (NCBI)ZNF418
Genatlas (Paris)ZNF418
WikiGenes147686
SOURCE (Princeton)ZNF418
Genetics Home Reference (NIH)ZNF418
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF418  -     chr19:57921884-57935387 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF418  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF418 - 19q13.43 [CytoView hg19]  ZNF418 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF418 [Mapview hg19]  ZNF418 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075836 AK056113 AK293723 AK304632 AY695825
RefSeq transcript (Entrez)NM_001317027 NM_001317028 NM_001317029 NM_001317030 NM_133460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF418
Cluster EST : UnigeneHs.660728 [ NCBI ]
CGAP (NCI)Hs.660728
Alternative Splicing GalleryENSG00000196724
Gene ExpressionZNF418 [ NCBI-GEO ]   ZNF418 [ EBI - ARRAY_EXPRESS ]   ZNF418 [ SEEK ]   ZNF418 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF418 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147686
GTEX Portal (Tissue expression)ZNF418
Human Protein AtlasENSG00000196724-ZNF418 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF45
Splice isoforms : SwissVarQ8TF45
PhosPhoSitePlusQ8TF45
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF418
DMDM Disease mutations147686
Blocks (Seattle)ZNF418
SuperfamilyQ8TF45
Human Protein Atlas [tissue]ENSG00000196724-ZNF418 [tissue]
Peptide AtlasQ8TF45
HPRD11714
IPIIPI01010233   IPI00152845   IPI00922712   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF45
IntAct (EBI)Q8TF45
FunCoupENSG00000196724
BioGRIDZNF418
STRING (EMBL)ZNF418
ZODIACZNF418
Ontologies - Pathways
QuickGOQ8TF45
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF418
Atlas of Cancer Signalling NetworkZNF418
Wikipedia pathwaysZNF418
Orthology - Evolution
OrthoDB147686
GeneTree (enSembl)ENSG00000196724
Phylogenetic Trees/Animal Genes : TreeFamZNF418
HOVERGENQ8TF45
HOGENOMQ8TF45
Homologs : HomoloGeneZNF418
Homology/Alignments : Family Browser (UCSC)ZNF418
Gene fusions - Rearrangements
Tumor Fusion PortalZNF418
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF418 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF418
dbVarZNF418
ClinVarZNF418
1000_GenomesZNF418 
Exome Variant ServerZNF418
ExAC (Exome Aggregation Consortium)ENSG00000196724
GNOMAD BrowserENSG00000196724
Genetic variants : HAPMAP147686
Genomic Variants (DGV)ZNF418 [DGVbeta]
DECIPHERZNF418 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF418 
Mutations
ICGC Data PortalZNF418 
TCGA Data PortalZNF418 
Broad Tumor PortalZNF418
OASIS PortalZNF418 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF418  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF418
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF418
DgiDB (Drug Gene Interaction Database)ZNF418
DoCM (Curated mutations)ZNF418 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF418 (select a term)
intoGenZNF418
Cancer3DZNF418(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF418
MedgenZNF418
Genetic Testing Registry ZNF418
NextProtQ8TF45 [Medical]
TSGene147686
GENETestsZNF418
Target ValidationZNF418
Huge Navigator ZNF418 [HugePedia]
snp3D : Map Gene to Disease147686
BioCentury BCIQZNF418
ClinGenZNF418
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147686
Chemical/Pharm GKB GenePA134912102
Clinical trialZNF418
Miscellaneous
canSAR (ICR)ZNF418 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF418
EVEXZNF418
GoPubMedZNF418
iHOPZNF418
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:33 CET 2017

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