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ZNF419 (zinc finger protein 419)

Identity

Alias_namesZNF419A
zinc finger protein 419A
Alias_symbol (synonym)ZAPHIR
Other alias
HGNC (Hugo) ZNF419
LocusID (NCBI) 79744
Atlas_Id 76145
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57487711 and ends at 57494680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF419   20648
Cards
Entrez_Gene (NCBI)ZNF419  79744  zinc finger protein 419
AliasesZAPHIR; ZNF419A
GeneCards (Weizmann)ZNF419
Ensembl hg19 (Hinxton)ENSG00000105136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105136 [Gene_View]  chr19:57487711-57494680 [Contig_View]  ZNF419 [Vega]
ICGC DataPortalENSG00000105136
TCGA cBioPortalZNF419
AceView (NCBI)ZNF419
Genatlas (Paris)ZNF419
WikiGenes79744
SOURCE (Princeton)ZNF419
Genetics Home Reference (NIH)ZNF419
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF419  -     chr19:57487711-57494680 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF419  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF419 - 19q13.43 [CytoView hg19]  ZNF419 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF419 [Mapview hg19]  ZNF419 [Mapview hg38]
OMIM617410   
Gene and transcription
Genbank (Entrez)AB209371 AK026886 AK302135 AK304569 AK307802
RefSeq transcript (Entrez)NM_001098491 NM_001098492 NM_001098493 NM_001098494 NM_001098495 NM_001098496 NM_001291743 NM_001291744 NM_001291745 NM_024691
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF419
Cluster EST : UnigeneHs.744339 [ NCBI ]
CGAP (NCI)Hs.744339
Alternative Splicing GalleryENSG00000105136
Gene ExpressionZNF419 [ NCBI-GEO ]   ZNF419 [ EBI - ARRAY_EXPRESS ]   ZNF419 [ SEEK ]   ZNF419 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF419 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79744
GTEX Portal (Tissue expression)ZNF419
Human Protein AtlasENSG00000105136-ZNF419 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HQ0
Splice isoforms : SwissVarQ96HQ0
PhosPhoSitePlusQ96HQ0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF419
DMDM Disease mutations79744
Blocks (Seattle)ZNF419
SuperfamilyQ96HQ0
Human Protein Atlas [tissue]ENSG00000105136-ZNF419 [tissue]
Peptide AtlasQ96HQ0
HPRD08665
IPIIPI00396652   IPI00291674   IPI00942459   IPI01009386   IPI00334218   IPI00848095   IPI00847868   IPI00847804   IPI00979220   IPI00848262   IPI00847595   IPI00978354   IPI00979922   IPI00973788   IPI00974515   IPI00980417   IPI00974135   
Protein Interaction databases
DIP (DOE-UCLA)Q96HQ0
IntAct (EBI)Q96HQ0
FunCoupENSG00000105136
BioGRIDZNF419
STRING (EMBL)ZNF419
ZODIACZNF419
Ontologies - Pathways
QuickGOQ96HQ0
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF419
Atlas of Cancer Signalling NetworkZNF419
Wikipedia pathwaysZNF419
Orthology - Evolution
OrthoDB79744
GeneTree (enSembl)ENSG00000105136
Phylogenetic Trees/Animal Genes : TreeFamZNF419
HOVERGENQ96HQ0
HOGENOMQ96HQ0
Homologs : HomoloGeneZNF419
Homology/Alignments : Family Browser (UCSC)ZNF419
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF419
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF419 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF419
dbVarZNF419
ClinVarZNF419
1000_GenomesZNF419 
Exome Variant ServerZNF419
ExAC (Exome Aggregation Consortium)ENSG00000105136
GNOMAD BrowserENSG00000105136
Genetic variants : HAPMAP79744
Genomic Variants (DGV)ZNF419 [DGVbeta]
DECIPHERZNF419 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF419 
Mutations
ICGC Data PortalZNF419 
TCGA Data PortalZNF419 
Broad Tumor PortalZNF419
OASIS PortalZNF419 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF419  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF419
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF419
DgiDB (Drug Gene Interaction Database)ZNF419
DoCM (Curated mutations)ZNF419 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF419 (select a term)
intoGenZNF419
Cancer3DZNF419(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617410   
Orphanet
MedgenZNF419
Genetic Testing Registry ZNF419
NextProtQ96HQ0 [Medical]
TSGene79744
GENETestsZNF419
Target ValidationZNF419
Huge Navigator ZNF419 [HugePedia]
snp3D : Map Gene to Disease79744
BioCentury BCIQZNF419
ClinGenZNF419
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79744
Chemical/Pharm GKB GenePA134871733
Clinical trialZNF419
Miscellaneous
canSAR (ICR)ZNF419 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF419
EVEXZNF419
GoPubMedZNF419
iHOPZNF419
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:05 CET 2017

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