Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF420 (zinc finger protein 420)

Identity

Alias_symbol (synonym)FLJ32191
Other aliasAPAK
HGNC (Hugo) ZNF420
LocusID (NCBI) 147923
Atlas_Id 51718
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37078222 and ends at 37130366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLR2E (19p13.3) / ZNF420 (19q13.12)POLR2E 19p13.3 / ZNF420 19q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF420   20649
Cards
Entrez_Gene (NCBI)ZNF420  147923  zinc finger protein 420
AliasesAPAK
GeneCards (Weizmann)ZNF420
Ensembl hg19 (Hinxton)ENSG00000197050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197050 [Gene_View]  chr19:37078222-37130366 [Contig_View]  ZNF420 [Vega]
ICGC DataPortalENSG00000197050
TCGA cBioPortalZNF420
AceView (NCBI)ZNF420
Genatlas (Paris)ZNF420
WikiGenes147923
SOURCE (Princeton)ZNF420
Genetics Home Reference (NIH)ZNF420
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF420  -     chr19:37078222-37130366 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF420  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF420 - 19q13.12 [CytoView hg19]  ZNF420 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF420 [Mapview hg19]  ZNF420 [Mapview hg38]
OMIM617216   
Gene and transcription
Genbank (Entrez)AK056695 AK056753 AK315728 BC026210
RefSeq transcript (Entrez)NM_001329515 NM_001329516 NM_001329517 NM_001329518 NM_001329519 NM_001329520 NM_001329521 NM_001329522 NM_001329524 NM_144689
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF420
Cluster EST : UnigeneHs.444992 [ NCBI ]
CGAP (NCI)Hs.444992
Alternative Splicing GalleryENSG00000197050
Gene ExpressionZNF420 [ NCBI-GEO ]   ZNF420 [ EBI - ARRAY_EXPRESS ]   ZNF420 [ SEEK ]   ZNF420 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF420 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147923
GTEX Portal (Tissue expression)ZNF420
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAQ5
Splice isoforms : SwissVarQ8TAQ5
PhosPhoSitePlusQ8TAQ5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF420
DMDM Disease mutations147923
Blocks (Seattle)ZNF420
SuperfamilyQ8TAQ5
Human Protein AtlasENSG00000197050
Peptide AtlasQ8TAQ5
HPRD08122
IPIIPI00154558   IPI00793966   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAQ5
IntAct (EBI)Q8TAQ5
FunCoupENSG00000197050
BioGRIDZNF420
STRING (EMBL)ZNF420
ZODIACZNF420
Ontologies - Pathways
QuickGOQ8TAQ5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of apoptotic process  metal ion binding  extracellular exosome  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of apoptotic process  metal ion binding  extracellular exosome  
NDEx NetworkZNF420
Atlas of Cancer Signalling NetworkZNF420
Wikipedia pathwaysZNF420
Orthology - Evolution
OrthoDB147923
GeneTree (enSembl)ENSG00000197050
Phylogenetic Trees/Animal Genes : TreeFamZNF420
HOVERGENQ8TAQ5
HOGENOMQ8TAQ5
Homologs : HomoloGeneZNF420
Homology/Alignments : Family Browser (UCSC)ZNF420
Gene fusions - Rearrangements
Fusion : MitelmanPOLR2E/ZNF420 [19p13.3/19q13.12]  [t(19;19)(p13;q13)]  
Fusion: TCGAPOLR2E 19p13.3 ZNF420 19q13.12 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF420 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF420
dbVarZNF420
ClinVarZNF420
1000_GenomesZNF420 
Exome Variant ServerZNF420
ExAC (Exome Aggregation Consortium)ZNF420 (select the gene name)
Genetic variants : HAPMAP147923
Genomic Variants (DGV)ZNF420 [DGVbeta]
DECIPHERZNF420 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF420 
Mutations
ICGC Data PortalZNF420 
TCGA Data PortalZNF420 
Broad Tumor PortalZNF420
OASIS PortalZNF420 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF420  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF420
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF420
DgiDB (Drug Gene Interaction Database)ZNF420
DoCM (Curated mutations)ZNF420 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF420 (select a term)
intoGenZNF420
Cancer3DZNF420(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617216   
Orphanet
MedgenZNF420
Genetic Testing Registry ZNF420
NextProtQ8TAQ5 [Medical]
TSGene147923
GENETestsZNF420
Target ValidationZNF420
Huge Navigator ZNF420 [HugePedia]
snp3D : Map Gene to Disease147923
BioCentury BCIQZNF420
ClinGenZNF420
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147923
Chemical/Pharm GKB GenePA134958420
Clinical trialZNF420
Miscellaneous
canSAR (ICR)ZNF420 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF420
EVEXZNF420
GoPubMedZNF420
iHOPZNF420
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.