Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF425 (zinc finger protein 425)

Identity

Other alias-
HGNC (Hugo) ZNF425
LocusID (NCBI) 155054
Atlas_Id 76146
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 148799878 and ends at 148823438 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF425   20690
Cards
Entrez_Gene (NCBI)ZNF425  155054  zinc finger protein 425
Aliases
GeneCards (Weizmann)ZNF425
Ensembl hg19 (Hinxton)ENSG00000204947 [Gene_View]  chr7:148799878-148823438 [Contig_View]  ZNF425 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204947 [Gene_View]  chr7:148799878-148823438 [Contig_View]  ZNF425 [Vega]
ICGC DataPortalENSG00000204947
TCGA cBioPortalZNF425
AceView (NCBI)ZNF425
Genatlas (Paris)ZNF425
WikiGenes155054
SOURCE (Princeton)ZNF425
Genetics Home Reference (NIH)ZNF425
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF425  -     chr7:148799878-148823438 -  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF425  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblZNF425 - 7q36.1 [CytoView hg19]  ZNF425 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIZNF425 [Mapview hg19]  ZNF425 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056498 AY621067 BC125189
RefSeq transcript (Entrez)NM_001001661
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)ZNF425
Cluster EST : UnigeneHs.31743 [ NCBI ]
CGAP (NCI)Hs.31743
Alternative Splicing GalleryENSG00000204947
Gene ExpressionZNF425 [ NCBI-GEO ]   ZNF425 [ EBI - ARRAY_EXPRESS ]   ZNF425 [ SEEK ]   ZNF425 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF425 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155054
GTEX Portal (Tissue expression)ZNF425
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IV72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IV72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IV72
Splice isoforms : SwissVarQ6IV72
PhosPhoSitePlusQ6IV72
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF425
DMDM Disease mutations155054
Blocks (Seattle)ZNF425
SuperfamilyQ6IV72
Human Protein AtlasENSG00000204947
Peptide AtlasQ6IV72
HPRD11715
IPIIPI00184520   IPI00946656   
Protein Interaction databases
DIP (DOE-UCLA)Q6IV72
IntAct (EBI)Q6IV72
FunCoupENSG00000204947
BioGRIDZNF425
STRING (EMBL)ZNF425
ZODIACZNF425
Ontologies - Pathways
QuickGOQ6IV72
Ontology : AmiGODNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF425
Atlas of Cancer Signalling NetworkZNF425
Wikipedia pathwaysZNF425
Orthology - Evolution
OrthoDB155054
GeneTree (enSembl)ENSG00000204947
Phylogenetic Trees/Animal Genes : TreeFamZNF425
HOVERGENQ6IV72
HOGENOMQ6IV72
Homologs : HomoloGeneZNF425
Homology/Alignments : Family Browser (UCSC)ZNF425
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF425 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF425
dbVarZNF425
ClinVarZNF425
1000_GenomesZNF425 
Exome Variant ServerZNF425
ExAC (Exome Aggregation Consortium)ZNF425 (select the gene name)
Genetic variants : HAPMAP155054
Genomic Variants (DGV)ZNF425 [DGVbeta]
DECIPHER (Syndromes)7:148799878-148823438  ENSG00000204947
CONAN: Copy Number AnalysisZNF425 
Mutations
ICGC Data PortalZNF425 
TCGA Data PortalZNF425 
Broad Tumor PortalZNF425
OASIS PortalZNF425 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF425  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF425
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF425
DgiDB (Drug Gene Interaction Database)ZNF425
DoCM (Curated mutations)ZNF425 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF425 (select a term)
intoGenZNF425
Cancer3DZNF425(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF425
Genetic Testing Registry ZNF425
NextProtQ6IV72 [Medical]
TSGene155054
GENETestsZNF425
Huge Navigator ZNF425 [HugePedia]
snp3D : Map Gene to Disease155054
BioCentury BCIQZNF425
ClinGenZNF425
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155054
Chemical/Pharm GKB GenePA134984453
Clinical trialZNF425
Miscellaneous
canSAR (ICR)ZNF425 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF425
EVEXZNF425
GoPubMedZNF425
iHOPZNF425
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:53:00 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.