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ZNF426 (zinc finger protein 426)

Identity

Alias_symbol (synonym)MGC2663
Other aliasK-RBP
HGNC (Hugo) ZNF426
LocusID (NCBI) 79088
Atlas_Id 76147
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9523224 and ends at 9538645 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF426   20725
Cards
Entrez_Gene (NCBI)ZNF426  79088  zinc finger protein 426
AliasesK-RBP
GeneCards (Weizmann)ZNF426
Ensembl hg19 (Hinxton)ENSG00000130818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130818 [Gene_View]  chr19:9523224-9538645 [Contig_View]  ZNF426 [Vega]
ICGC DataPortalENSG00000130818
TCGA cBioPortalZNF426
AceView (NCBI)ZNF426
Genatlas (Paris)ZNF426
WikiGenes79088
SOURCE (Princeton)ZNF426
Genetics Home Reference (NIH)ZNF426
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF426  -     chr19:9523224-9538645 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF426  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF426 - 19p13.2 [CytoView hg19]  ZNF426 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF426 [Mapview hg19]  ZNF426 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209837 AK024250 AK095759 BC001791 BE315219
RefSeq transcript (Entrez)NM_001300883 NM_001318055 NM_001318056 NM_024106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF426
Cluster EST : UnigeneHs.594011 [ NCBI ]
CGAP (NCI)Hs.594011
Alternative Splicing GalleryENSG00000130818
Gene ExpressionZNF426 [ NCBI-GEO ]   ZNF426 [ EBI - ARRAY_EXPRESS ]   ZNF426 [ SEEK ]   ZNF426 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF426 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79088
GTEX Portal (Tissue expression)ZNF426
Human Protein AtlasENSG00000130818-ZNF426 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUY5
Splice isoforms : SwissVarQ9BUY5
PhosPhoSitePlusQ9BUY5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_BED    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_BED (SM00614)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF426
DMDM Disease mutations79088
Blocks (Seattle)ZNF426
SuperfamilyQ9BUY5
Human Protein Atlas [tissue]ENSG00000130818-ZNF426 [tissue]
Peptide AtlasQ9BUY5
HPRD15787
IPIIPI00012209   IPI01013956   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUY5
IntAct (EBI)Q9BUY5
FunCoupENSG00000130818
BioGRIDZNF426
STRING (EMBL)ZNF426
ZODIACZNF426
Ontologies - Pathways
QuickGOQ9BUY5
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF426
Atlas of Cancer Signalling NetworkZNF426
Wikipedia pathwaysZNF426
Orthology - Evolution
OrthoDB79088
GeneTree (enSembl)ENSG00000130818
Phylogenetic Trees/Animal Genes : TreeFamZNF426
HOVERGENQ9BUY5
HOGENOMQ9BUY5
Homologs : HomoloGeneZNF426
Homology/Alignments : Family Browser (UCSC)ZNF426
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF426
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF426 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF426
dbVarZNF426
ClinVarZNF426
1000_GenomesZNF426 
Exome Variant ServerZNF426
ExAC (Exome Aggregation Consortium)ENSG00000130818
GNOMAD BrowserENSG00000130818
Genetic variants : HAPMAP79088
Genomic Variants (DGV)ZNF426 [DGVbeta]
DECIPHERZNF426 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF426 
Mutations
ICGC Data PortalZNF426 
TCGA Data PortalZNF426 
Broad Tumor PortalZNF426
OASIS PortalZNF426 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF426  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF426
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF426
DgiDB (Drug Gene Interaction Database)ZNF426
DoCM (Curated mutations)ZNF426 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF426 (select a term)
intoGenZNF426
Cancer3DZNF426(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF426
Genetic Testing Registry ZNF426
NextProtQ9BUY5 [Medical]
TSGene79088
GENETestsZNF426
Target ValidationZNF426
Huge Navigator ZNF426 [HugePedia]
snp3D : Map Gene to Disease79088
BioCentury BCIQZNF426
ClinGenZNF426
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79088
Chemical/Pharm GKB GenePA134991761
Clinical trialZNF426
Miscellaneous
canSAR (ICR)ZNF426 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF426
EVEXZNF426
GoPubMedZNF426
iHOPZNF426
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:05 CET 2017

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