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ZNF428 (zinc finger protein 428)

Identity

Alias_namesC19orf37
chromosome 19 open reading frame 37
Alias_symbol (synonym)MGC51082
Zfp428
Other alias
HGNC (Hugo) ZNF428
LocusID (NCBI) 126299
Atlas_Id 76148
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43607224 and ends at 43619862 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CADM4 (19q13.31) / ZNF428 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF428   20804
Cards
Entrez_Gene (NCBI)ZNF428  126299  zinc finger protein 428
AliasesC19orf37; Zfp428
GeneCards (Weizmann)ZNF428
Ensembl hg19 (Hinxton)ENSG00000131116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131116 [Gene_View]  chr19:43607224-43619862 [Contig_View]  ZNF428 [Vega]
ICGC DataPortalENSG00000131116
TCGA cBioPortalZNF428
AceView (NCBI)ZNF428
Genatlas (Paris)ZNF428
WikiGenes126299
SOURCE (Princeton)ZNF428
Genetics Home Reference (NIH)ZNF428
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF428  -     chr19:43607224-43619862 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF428  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF428 - 19q13.31 [CytoView hg19]  ZNF428 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF428 [Mapview hg19]  ZNF428 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA215292 AI569354 AY257197 BC015950 BC045799
RefSeq transcript (Entrez)NM_182498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF428
Cluster EST : UnigeneHs.99093 [ NCBI ]
CGAP (NCI)Hs.99093
Alternative Splicing GalleryENSG00000131116
Gene ExpressionZNF428 [ NCBI-GEO ]   ZNF428 [ EBI - ARRAY_EXPRESS ]   ZNF428 [ SEEK ]   ZNF428 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF428 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126299
GTEX Portal (Tissue expression)ZNF428
Human Protein AtlasENSG00000131116-ZNF428 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B54
Splice isoforms : SwissVarQ96B54
PhosPhoSitePlusQ96B54
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF428
DMDM Disease mutations126299
Blocks (Seattle)ZNF428
SuperfamilyQ96B54
Human Protein Atlas [tissue]ENSG00000131116-ZNF428 [tissue]
Peptide AtlasQ96B54
HPRD14671
IPIIPI00059764   IPI00098524   
Protein Interaction databases
DIP (DOE-UCLA)Q96B54
IntAct (EBI)Q96B54
FunCoupENSG00000131116
BioGRIDZNF428
STRING (EMBL)ZNF428
ZODIACZNF428
Ontologies - Pathways
QuickGOQ96B54
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkZNF428
Atlas of Cancer Signalling NetworkZNF428
Wikipedia pathwaysZNF428
Orthology - Evolution
OrthoDB126299
GeneTree (enSembl)ENSG00000131116
Phylogenetic Trees/Animal Genes : TreeFamZNF428
HOVERGENQ96B54
HOGENOMQ96B54
Homologs : HomoloGeneZNF428
Homology/Alignments : Family Browser (UCSC)ZNF428
Gene fusions - Rearrangements
Tumor Fusion PortalZNF428
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF428 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF428
dbVarZNF428
ClinVarZNF428
1000_GenomesZNF428 
Exome Variant ServerZNF428
ExAC (Exome Aggregation Consortium)ENSG00000131116
GNOMAD BrowserENSG00000131116
Genetic variants : HAPMAP126299
Genomic Variants (DGV)ZNF428 [DGVbeta]
DECIPHERZNF428 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF428 
Mutations
ICGC Data PortalZNF428 
TCGA Data PortalZNF428 
Broad Tumor PortalZNF428
OASIS PortalZNF428 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF428  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF428
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF428
DgiDB (Drug Gene Interaction Database)ZNF428
DoCM (Curated mutations)ZNF428 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF428 (select a term)
intoGenZNF428
Cancer3DZNF428(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF428
MedgenZNF428
Genetic Testing Registry ZNF428
NextProtQ96B54 [Medical]
TSGene126299
GENETestsZNF428
Target ValidationZNF428
Huge Navigator ZNF428 [HugePedia]
snp3D : Map Gene to Disease126299
BioCentury BCIQZNF428
ClinGenZNF428
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126299
Chemical/Pharm GKB GenePA142672216
Clinical trialZNF428
Miscellaneous
canSAR (ICR)ZNF428 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF428
EVEXZNF428
GoPubMedZNF428
iHOPZNF428
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:34 CET 2017

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