Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF429 (zinc finger protein 429)

Identity

Other alias-
HGNC (Hugo) ZNF429
LocusID (NCBI) 353088
Atlas_Id 76149
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21505552 and ends at 21540667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF429 (19p12) / ZNF429 (19p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF429   20817
Cards
Entrez_Gene (NCBI)ZNF429  353088  zinc finger protein 429
Aliases
GeneCards (Weizmann)ZNF429
Ensembl hg19 (Hinxton)ENSG00000197013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197013 [Gene_View]  chr19:21505552-21540667 [Contig_View]  ZNF429 [Vega]
ICGC DataPortalENSG00000197013
TCGA cBioPortalZNF429
AceView (NCBI)ZNF429
Genatlas (Paris)ZNF429
WikiGenes353088
SOURCE (Princeton)ZNF429
Genetics Home Reference (NIH)ZNF429
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF429  -     chr19:21505552-21540667 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF429  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF429 - 19p12 [CytoView hg19]  ZNF429 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF429 [Mapview hg19]  ZNF429 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF325191 AK057495 AK308708 AY269786 BC156455
RefSeq transcript (Entrez)NM_001001415 NM_001346912 NM_001346913 NM_001346914 NM_001346915 NM_001346916
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF429
Cluster EST : UnigeneHs.709598 [ NCBI ]
CGAP (NCI)Hs.709598
Alternative Splicing GalleryENSG00000197013
Gene ExpressionZNF429 [ NCBI-GEO ]   ZNF429 [ EBI - ARRAY_EXPRESS ]   ZNF429 [ SEEK ]   ZNF429 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF429 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353088
GTEX Portal (Tissue expression)ZNF429
Human Protein AtlasENSG00000197013-ZNF429 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V71
Splice isoforms : SwissVarQ86V71
PhosPhoSitePlusQ86V71
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF429
DMDM Disease mutations353088
Blocks (Seattle)ZNF429
SuperfamilyQ86V71
Human Protein Atlas [tissue]ENSG00000197013-ZNF429 [tissue]
Peptide AtlasQ86V71
HPRD18342
IPIIPI00871958   
Protein Interaction databases
DIP (DOE-UCLA)Q86V71
IntAct (EBI)Q86V71
FunCoupENSG00000197013
BioGRIDZNF429
STRING (EMBL)ZNF429
ZODIACZNF429
Ontologies - Pathways
QuickGOQ86V71
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF429
Atlas of Cancer Signalling NetworkZNF429
Wikipedia pathwaysZNF429
Orthology - Evolution
OrthoDB353088
GeneTree (enSembl)ENSG00000197013
Phylogenetic Trees/Animal Genes : TreeFamZNF429
HOVERGENQ86V71
HOGENOMQ86V71
Homologs : HomoloGeneZNF429
Homology/Alignments : Family Browser (UCSC)ZNF429
Gene fusions - Rearrangements
Fusion : QuiverZNF429
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF429 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF429
dbVarZNF429
ClinVarZNF429
1000_GenomesZNF429 
Exome Variant ServerZNF429
ExAC (Exome Aggregation Consortium)ENSG00000197013
GNOMAD BrowserENSG00000197013
Genetic variants : HAPMAP353088
Genomic Variants (DGV)ZNF429 [DGVbeta]
DECIPHERZNF429 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF429 
Mutations
ICGC Data PortalZNF429 
TCGA Data PortalZNF429 
Broad Tumor PortalZNF429
OASIS PortalZNF429 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF429  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF429
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF429
DgiDB (Drug Gene Interaction Database)ZNF429
DoCM (Curated mutations)ZNF429 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF429 (select a term)
intoGenZNF429
Cancer3DZNF429(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF429
MedgenZNF429
Genetic Testing Registry ZNF429
NextProtQ86V71 [Medical]
TSGene353088
GENETestsZNF429
Target ValidationZNF429
Huge Navigator ZNF429 [HugePedia]
snp3D : Map Gene to Disease353088
BioCentury BCIQZNF429
ClinGenZNF429
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353088
Chemical/Pharm GKB GenePA134910790
Clinical trialZNF429
Miscellaneous
canSAR (ICR)ZNF429 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF429
EVEXZNF429
GoPubMedZNF429
iHOPZNF429
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:59:21 CET 2018
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