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ZNF436-AS1 (ZNF436 antisense RNA 1)

Identity

Alias_namesC1orf213
chromosome 1 open reading frame 213
Alias_symbol (synonym)FLJ90508
Other alias
HGNC (Hugo) ZNF436-AS1
LocusID (NCBI) 148898
Atlas_Id 76155
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23369057 and ends at 23371779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF436-AS1   25122
Cards
Entrez_Gene (NCBI)ZNF436-AS1  148898  ZNF436 antisense RNA 1
AliasesC1orf213
GeneCards (Weizmann)ZNF436-AS1
Ensembl hg19 (Hinxton)ENSG00000249087 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249087 [Gene_View]  chr1:23369057-23371779 [Contig_View]  ZNF436-AS1 [Vega]
ICGC DataPortalENSG00000249087
TCGA cBioPortalZNF436-AS1
AceView (NCBI)ZNF436-AS1
Genatlas (Paris)ZNF436-AS1
WikiGenes148898
SOURCE (Princeton)ZNF436-AS1
Genetics Home Reference (NIH)ZNF436-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF436-AS1  -     chr1:23369057-23371779 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF436-AS1  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblZNF436-AS1 - 1p36.12 [CytoView hg19]  ZNF436-AS1 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIZNF436-AS1 [Mapview hg19]  ZNF436-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074989 BC007899 BC028411 BC054115 BC068594
RefSeq transcript (Entrez)NM_001008896 NM_138479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF436-AS1
Cluster EST : UnigeneHs.61884 [ NCBI ]
CGAP (NCI)Hs.61884
Alternative Splicing GalleryENSG00000249087
Gene ExpressionZNF436-AS1 [ NCBI-GEO ]   ZNF436-AS1 [ EBI - ARRAY_EXPRESS ]   ZNF436-AS1 [ SEEK ]   ZNF436-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF436-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148898
GTEX Portal (Tissue expression)ZNF436-AS1
Human Protein AtlasENSG00000249087-ZNF436-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC38
Splice isoforms : SwissVarQ8NC38
PhosPhoSitePlusQ8NC38
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF436-AS1
DMDM Disease mutations148898
Blocks (Seattle)ZNF436-AS1
SuperfamilyQ8NC38
Human Protein Atlas [tissue]ENSG00000249087-ZNF436-AS1 [tissue]
Peptide AtlasQ8NC38
HPRD14083
IPIIPI00301286   IPI00974358   IPI00980686   IPI00981295   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC38
IntAct (EBI)Q8NC38
FunCoupENSG00000249087
BioGRIDZNF436-AS1
STRING (EMBL)ZNF436-AS1
ZODIACZNF436-AS1
Ontologies - Pathways
QuickGOQ8NC38
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkZNF436-AS1
Atlas of Cancer Signalling NetworkZNF436-AS1
Wikipedia pathwaysZNF436-AS1
Orthology - Evolution
OrthoDB148898
GeneTree (enSembl)ENSG00000249087
Phylogenetic Trees/Animal Genes : TreeFamZNF436-AS1
HOVERGENQ8NC38
HOGENOMQ8NC38
Homologs : HomoloGeneZNF436-AS1
Homology/Alignments : Family Browser (UCSC)ZNF436-AS1
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF436-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF436-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF436-AS1
dbVarZNF436-AS1
ClinVarZNF436-AS1
1000_GenomesZNF436-AS1 
Exome Variant ServerZNF436-AS1
ExAC (Exome Aggregation Consortium)ENSG00000249087
GNOMAD BrowserENSG00000249087
Genetic variants : HAPMAP148898
Genomic Variants (DGV)ZNF436-AS1 [DGVbeta]
DECIPHERZNF436-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF436-AS1 
Mutations
ICGC Data PortalZNF436-AS1 
TCGA Data PortalZNF436-AS1 
Broad Tumor PortalZNF436-AS1
OASIS PortalZNF436-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF436-AS1
BioMutasearch ZNF436-AS1
DgiDB (Drug Gene Interaction Database)ZNF436-AS1
DoCM (Curated mutations)ZNF436-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF436-AS1 (select a term)
intoGenZNF436-AS1
Cancer3DZNF436-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF436-AS1
Genetic Testing Registry ZNF436-AS1
NextProtQ8NC38 [Medical]
TSGene148898
GENETestsZNF436-AS1
Target ValidationZNF436-AS1
Huge Navigator ZNF436-AS1 [HugePedia]
snp3D : Map Gene to Disease148898
BioCentury BCIQZNF436-AS1
ClinGenZNF436-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148898
Chemical/Pharm GKB GenePA162378885
Clinical trialZNF436-AS1
Miscellaneous
canSAR (ICR)ZNF436-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF436-AS1
EVEXZNF436-AS1
GoPubMedZNF436-AS1
iHOPZNF436-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:07 CET 2017

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