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ZNF436 (zinc finger protein 436)

Identity

Alias_symbol (synonym)KIAA1710
Zfp46
Other aliasZNF
HGNC (Hugo) ZNF436
LocusID (NCBI) 80818
Atlas_Id 76154
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23359448 and ends at 23369864 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF436 (1p36.12) / RAPGEF3 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF436   20814
Cards
Entrez_Gene (NCBI)ZNF436  80818  zinc finger protein 436
AliasesZNF; Zfp46
GeneCards (Weizmann)ZNF436
Ensembl hg19 (Hinxton)ENSG00000125945 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125945 [Gene_View]  chr1:23359448-23369864 [Contig_View]  ZNF436 [Vega]
ICGC DataPortalENSG00000125945
TCGA cBioPortalZNF436
AceView (NCBI)ZNF436
Genatlas (Paris)ZNF436
WikiGenes80818
SOURCE (Princeton)ZNF436
Genetics Home Reference (NIH)ZNF436
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF436  -     chr1:23359448-23369864 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF436  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblZNF436 - 1p36.12 [CytoView hg19]  ZNF436 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIZNF436 [Mapview hg19]  ZNF436 [Mapview hg38]
OMIM611703   
Gene and transcription
Genbank (Entrez)AB051497 AK092364 AK308173 AL834485 BC056400
RefSeq transcript (Entrez)NM_001077195 NM_030634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF436
Cluster EST : UnigeneHs.293798 [ NCBI ]
CGAP (NCI)Hs.293798
Alternative Splicing GalleryENSG00000125945
Gene ExpressionZNF436 [ NCBI-GEO ]   ZNF436 [ EBI - ARRAY_EXPRESS ]   ZNF436 [ SEEK ]   ZNF436 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF436 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80818
GTEX Portal (Tissue expression)ZNF436
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0F3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0F3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0F3
Splice isoforms : SwissVarQ9C0F3
PhosPhoSitePlusQ9C0F3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF436
DMDM Disease mutations80818
Blocks (Seattle)ZNF436
SuperfamilyQ9C0F3
Human Protein AtlasENSG00000125945
Peptide AtlasQ9C0F3
HPRD15793
IPIIPI00028391   IPI00550309   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0F3
IntAct (EBI)Q9C0F3
FunCoupENSG00000125945
BioGRIDZNF436
STRING (EMBL)ZNF436
ZODIACZNF436
Ontologies - Pathways
QuickGOQ9C0F3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF436
Atlas of Cancer Signalling NetworkZNF436
Wikipedia pathwaysZNF436
Orthology - Evolution
OrthoDB80818
GeneTree (enSembl)ENSG00000125945
Phylogenetic Trees/Animal Genes : TreeFamZNF436
HOVERGENQ9C0F3
HOGENOMQ9C0F3
Homologs : HomoloGeneZNF436
Homology/Alignments : Family Browser (UCSC)ZNF436
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF436 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF436
dbVarZNF436
ClinVarZNF436
1000_GenomesZNF436 
Exome Variant ServerZNF436
ExAC (Exome Aggregation Consortium)ZNF436 (select the gene name)
Genetic variants : HAPMAP80818
Genomic Variants (DGV)ZNF436 [DGVbeta]
DECIPHERZNF436 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF436 
Mutations
ICGC Data PortalZNF436 
TCGA Data PortalZNF436 
Broad Tumor PortalZNF436
OASIS PortalZNF436 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF436  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF436
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF436
DgiDB (Drug Gene Interaction Database)ZNF436
DoCM (Curated mutations)ZNF436 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF436 (select a term)
intoGenZNF436
Cancer3DZNF436(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611703   
Orphanet
MedgenZNF436
Genetic Testing Registry ZNF436
NextProtQ9C0F3 [Medical]
TSGene80818
GENETestsZNF436
Target ValidationZNF436
Huge Navigator ZNF436 [HugePedia]
snp3D : Map Gene to Disease80818
BioCentury BCIQZNF436
ClinGenZNF436
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80818
Chemical/Pharm GKB GenePA134911283
Clinical trialZNF436
Miscellaneous
canSAR (ICR)ZNF436 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF436
EVEXZNF436
GoPubMedZNF436
iHOPZNF436
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:26 CEST 2017

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