Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF438 (zinc finger protein 438)

Identity

Alias (NCBI)bA330O11.1
HGNC (Hugo) ZNF438
HGNC Alias symbbA330O11.1
LocusID (NCBI) 220929
Atlas_Id 76156
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30844636 and ends at 31031937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICD1 (12p11.21) / ZNF438 (10p11.23)ZEB1 (10p11.22) / ZNF438 (10p11.23)ZNF438 (10p11.23) / ZNF438 (10p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF438   21029
Cards
Entrez_Gene (NCBI)ZNF438    zinc finger protein 438
AliasesbA330O11.1
GeneCards (Weizmann)ZNF438
Ensembl hg19 (Hinxton)ENSG00000183621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183621 [Gene_View]  ENSG00000183621 [Sequence]  chr10:30844636-31031937 [Contig_View]  ZNF438 [Vega]
ICGC DataPortalENSG00000183621
TCGA cBioPortalZNF438
AceView (NCBI)ZNF438
Genatlas (Paris)ZNF438
SOURCE (Princeton)ZNF438
Genetics Home Reference (NIH)ZNF438
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF438  -     chr10:30844636-31031937 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF438  -     10p11.23   [Description]    (hg19-Feb_2009)
GoldenPathZNF438 - 10p11.23 [CytoView hg19]  ZNF438 - 10p11.23 [CytoView hg38]
ImmunoBaseENSG00000183621
Genome Data Viewer NCBIZNF438 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF428258 AF440405 AI703004 AK057323 AK131357
RefSeq transcript (Entrez)NM_001143766 NM_001143767 NM_001143768 NM_001143769 NM_001143770 NM_001143771 NM_001387405 NM_001387411 NM_001387412 NM_182755
Consensus coding sequences : CCDS (NCBI)ZNF438
Gene ExpressionZNF438 [ NCBI-GEO ]   ZNF438 [ EBI - ARRAY_EXPRESS ]   ZNF438 [ SEEK ]   ZNF438 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF438 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF438 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220929
GTEX Portal (Tissue expression)ZNF438
Human Protein AtlasENSG00000183621-ZNF438 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4V0
PhosPhoSitePlusQ7Z4V0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF438
SuperfamilyQ7Z4V0
AlphaFold pdb e-kbQ7Z4V0   
Human Protein Atlas [tissue]ENSG00000183621-ZNF438 [tissue]
HPRD11247
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4V0
IntAct (EBI)Q7Z4V0
BioGRIDZNF438
STRING (EMBL)ZNF438
ZODIACZNF438
Ontologies - Pathways
QuickGOQ7Z4V0
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF438
Atlas of Cancer Signalling NetworkZNF438
Wikipedia pathwaysZNF438
Orthology - Evolution
OrthoDB220929
GeneTree (enSembl)ENSG00000183621
Phylogenetic Trees/Animal Genes : TreeFamZNF438
Homologs : HomoloGeneZNF438
Homology/Alignments : Family Browser (UCSC)ZNF438
Gene fusions - Rearrangements
Fusion : QuiverZNF438
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF438 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF438
dbVarZNF438
ClinVarZNF438
MonarchZNF438
1000_GenomesZNF438 
Exome Variant ServerZNF438
GNOMAD BrowserENSG00000183621
Varsome BrowserZNF438
ACMGZNF438 variants
VarityQ7Z4V0
Genomic Variants (DGV)ZNF438 [DGVbeta]
DECIPHERZNF438 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF438 
Mutations
ICGC Data PortalZNF438 
TCGA Data PortalZNF438 
Broad Tumor PortalZNF438
OASIS PortalZNF438 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF438  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF438
Mutations and Diseases : HGMDZNF438
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF438
DgiDB (Drug Gene Interaction Database)ZNF438
DoCM (Curated mutations)ZNF438
CIViC (Clinical Interpretations of Variants in Cancer)ZNF438
Cancer3DZNF438
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF438
MedgenZNF438
Genetic Testing Registry ZNF438
NextProtQ7Z4V0 [Medical]
GENETestsZNF438
Target ValidationZNF438
Huge Navigator ZNF438 [HugePedia]
ClinGenZNF438
Clinical trials, drugs, therapy
MyCancerGenomeZNF438
Protein Interactions : CTDZNF438
Pharm GKB GenePA143485677
PharosQ7Z4V0
Clinical trialZNF438
Miscellaneous
canSAR (ICR)ZNF438
HarmonizomeZNF438
DataMed IndexZNF438
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF438
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:29:42 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.