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ZNF439 (zinc finger protein 439)

Identity

Alias_symbol (synonym)DKFZp571K0837
Other alias-
HGNC (Hugo) ZNF439
LocusID (NCBI) 90594
Atlas_Id 76157
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11848733 and ends at 11869491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MLLT1 (19p13.3) / ZNF439 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF439   20873
Cards
Entrez_Gene (NCBI)ZNF439  90594  zinc finger protein 439
Aliases
GeneCards (Weizmann)ZNF439
Ensembl hg19 (Hinxton)ENSG00000171291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171291 [Gene_View]  chr19:11848733-11869491 [Contig_View]  ZNF439 [Vega]
ICGC DataPortalENSG00000171291
TCGA cBioPortalZNF439
AceView (NCBI)ZNF439
Genatlas (Paris)ZNF439
WikiGenes90594
SOURCE (Princeton)ZNF439
Genetics Home Reference (NIH)ZNF439
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF439  -     chr19:11848733-11869491 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF439  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF439 - 19p13.2 [CytoView hg19]  ZNF439 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF439 [Mapview hg19]  ZNF439 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027542 AL833935 BC032857
RefSeq transcript (Entrez)NM_001348718 NM_001348719 NM_001348720 NM_001348721 NM_001348722 NM_001348723 NM_001348724 NM_001348725 NM_152262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF439
Cluster EST : UnigeneHs.528731 [ NCBI ]
CGAP (NCI)Hs.528731
Alternative Splicing GalleryENSG00000171291
Gene ExpressionZNF439 [ NCBI-GEO ]   ZNF439 [ EBI - ARRAY_EXPRESS ]   ZNF439 [ SEEK ]   ZNF439 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF439 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90594
GTEX Portal (Tissue expression)ZNF439
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDP4
Splice isoforms : SwissVarQ8NDP4
PhosPhoSitePlusQ8NDP4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF439
DMDM Disease mutations90594
Blocks (Seattle)ZNF439
SuperfamilyQ8NDP4
Human Protein AtlasENSG00000171291
Peptide AtlasQ8NDP4
HPRD11717
IPIIPI00168560   IPI00641003   IPI00924725   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDP4
IntAct (EBI)Q8NDP4
FunCoupENSG00000171291
BioGRIDZNF439
STRING (EMBL)ZNF439
ZODIACZNF439
Ontologies - Pathways
QuickGOQ8NDP4
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF439
Atlas of Cancer Signalling NetworkZNF439
Wikipedia pathwaysZNF439
Orthology - Evolution
OrthoDB90594
GeneTree (enSembl)ENSG00000171291
Phylogenetic Trees/Animal Genes : TreeFamZNF439
HOVERGENQ8NDP4
HOGENOMQ8NDP4
Homologs : HomoloGeneZNF439
Homology/Alignments : Family Browser (UCSC)ZNF439
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF439 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF439
dbVarZNF439
ClinVarZNF439
1000_GenomesZNF439 
Exome Variant ServerZNF439
ExAC (Exome Aggregation Consortium)ZNF439 (select the gene name)
Genetic variants : HAPMAP90594
Genomic Variants (DGV)ZNF439 [DGVbeta]
DECIPHERZNF439 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF439 
Mutations
ICGC Data PortalZNF439 
TCGA Data PortalZNF439 
Broad Tumor PortalZNF439
OASIS PortalZNF439 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF439  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF439
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF439
DgiDB (Drug Gene Interaction Database)ZNF439
DoCM (Curated mutations)ZNF439 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF439 (select a term)
intoGenZNF439
Cancer3DZNF439(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF439
Genetic Testing Registry ZNF439
NextProtQ8NDP4 [Medical]
TSGene90594
GENETestsZNF439
Target ValidationZNF439
Huge Navigator ZNF439 [HugePedia]
snp3D : Map Gene to Disease90594
BioCentury BCIQZNF439
ClinGenZNF439
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90594
Chemical/Pharm GKB GenePA134886330
Clinical trialZNF439
Miscellaneous
canSAR (ICR)ZNF439 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF439
EVEXZNF439
GoPubMedZNF439
iHOPZNF439
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:46 CEST 2017

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