Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF44 (zinc finger protein 44)

Identity

Alias (NCBI)GIOT-2
KOX7
ZNF
ZNF504
ZNF55
ZNF58
HGNC (Hugo) ZNF44
HGNC Alias symbKOX7
ZNF504
HGNC Previous nameZNF58
 ZNF55
HGNC Previous namezinc finger protein 58
 zinc finger protein 44 (KOX 7)
 zinc finger protein 55
LocusID (NCBI) 51710
Atlas_Id 76158
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12271810 and ends at 12294899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNA1A (19p13.2) / ZNF44 (19p13.2)NSRP1 (17q11.2) / ZNF44 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CACNA1A/ZNF44 (19p13)

External links

Nomenclature
HGNC (Hugo)ZNF44   13110
Cards
Entrez_Gene (NCBI)ZNF44    zinc finger protein 44
AliasesGIOT-2; KOX7; ZNF; ZNF504; 
ZNF55; ZNF58
GeneCards (Weizmann)ZNF44
Ensembl hg19 (Hinxton)ENSG00000197857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197857 [Gene_View]  ENSG00000197857 [Sequence]  chr19:12271810-12294899 [Contig_View]  ZNF44 [Vega]
ICGC DataPortalENSG00000197857
TCGA cBioPortalZNF44
AceView (NCBI)ZNF44
Genatlas (Paris)ZNF44
SOURCE (Princeton)ZNF44
Genetics Home Reference (NIH)ZNF44
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF44  -     chr19:12271810-12294899 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF44  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF44 - 19p13.2 [CytoView hg19]  ZNF44 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000197857
genome Data Viewer NCBIZNF44 [Mapview hg19]  
OMIM194542   
Gene and transcription
Genbank (Entrez)AA525756 AB021642 AF024706 AK297528 AW795413
RefSeq transcript (Entrez)NM_001164276 NM_001353549 NM_001353550 NM_001353551 NM_001353552 NM_001353553 NM_016264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF44
Alternative Splicing GalleryENSG00000197857
Gene ExpressionZNF44 [ NCBI-GEO ]   ZNF44 [ EBI - ARRAY_EXPRESS ]   ZNF44 [ SEEK ]   ZNF44 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF44 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF44 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51710
GTEX Portal (Tissue expression)ZNF44
Human Protein AtlasENSG00000197857-ZNF44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15621   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15621  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15621
Splice isoforms : SwissVarP15621
PhosPhoSitePlusP15621
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF44
Blocks (Seattle)ZNF44
SuperfamilyP15621
Human Protein Atlas [tissue]ENSG00000197857-ZNF44 [tissue]
Peptide AtlasP15621
HPRD01927
IPIIPI00012504   IPI00924525   IPI00974554   IPI00639933   IPI00410610   IPI00871871   IPI00306144   
Protein Interaction databases
DIP (DOE-UCLA)P15621
IntAct (EBI)P15621
BioGRIDZNF44
STRING (EMBL)ZNF44
ZODIACZNF44
Ontologies - Pathways
QuickGOP15621
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF44
Atlas of Cancer Signalling NetworkZNF44
Wikipedia pathwaysZNF44
Orthology - Evolution
OrthoDB51710
GeneTree (enSembl)ENSG00000197857
Phylogenetic Trees/Animal Genes : TreeFamZNF44
HOGENOMP15621
Homologs : HomoloGeneZNF44
Homology/Alignments : Family Browser (UCSC)ZNF44
Gene fusions - Rearrangements
Fusion : QuiverZNF44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF44 [hg38]
dbVarZNF44
ClinVarZNF44
MonarchZNF44
1000_GenomesZNF44 
Exome Variant ServerZNF44
GNOMAD BrowserENSG00000197857
Varsome BrowserZNF44
Genomic Variants (DGV)ZNF44 [DGVbeta]
DECIPHERZNF44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF44 
Mutations
ICGC Data PortalZNF44 
TCGA Data PortalZNF44 
Broad Tumor PortalZNF44
OASIS PortalZNF44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF44  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF44
Mutations and Diseases : HGMDZNF44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF44
DgiDB (Drug Gene Interaction Database)ZNF44
DoCM (Curated mutations)ZNF44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF44 (select a term)
intoGenZNF44
Cancer3DZNF44(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194542   
Orphanet
DisGeNETZNF44
MedgenZNF44
Genetic Testing Registry ZNF44
NextProtP15621 [Medical]
GENETestsZNF44
Target ValidationZNF44
Huge Navigator ZNF44 [HugePedia]
ClinGenZNF44
Clinical trials, drugs, therapy
MyCancerGenomeZNF44
Protein Interactions : CTD
Pharm GKB GenePA37685
Clinical trialZNF44
Miscellaneous
canSAR (ICR)ZNF44 (select the gene name)
HarmonizomeZNF44
DataMed IndexZNF44
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF44
EVEXZNF44
GoPubMedZNF44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:36:05 CET 2020
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