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ZNF44 (zinc finger protein 44)

Identity

Alias_namesZNF58
ZNF55
zinc finger protein 58
zinc finger protein 44 (KOX 7)
zinc finger protein 55
Alias_symbol (synonym)KOX7
ZNF504
Other aliasGIOT-2
ZNF
HGNC (Hugo) ZNF44
LocusID (NCBI) 51710
Atlas_Id 76158
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12271810 and ends at 12294899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CACNA1A (19p13.2) / ZNF44 (19p13.2)NSRP1 (17q11.2) / ZNF44 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF44   13110
Cards
Entrez_Gene (NCBI)ZNF44  51710  zinc finger protein 44
AliasesGIOT-2; KOX7; ZNF; ZNF504; 
ZNF55; ZNF58
GeneCards (Weizmann)ZNF44
Ensembl hg19 (Hinxton)ENSG00000197857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197857 [Gene_View]  chr19:12271810-12294899 [Contig_View]  ZNF44 [Vega]
ICGC DataPortalENSG00000197857
TCGA cBioPortalZNF44
AceView (NCBI)ZNF44
Genatlas (Paris)ZNF44
WikiGenes51710
SOURCE (Princeton)ZNF44
Genetics Home Reference (NIH)ZNF44
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF44  -     chr19:12271810-12294899 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF44  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF44 - 19p13.2 [CytoView hg19]  ZNF44 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF44 [Mapview hg19]  ZNF44 [Mapview hg38]
OMIM194542   
Gene and transcription
Genbank (Entrez)AA525756 AB021642 AF024706 AK297528 AW795413
RefSeq transcript (Entrez)NM_001164276 NM_016264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF44
Cluster EST : UnigeneHs.296731 [ NCBI ]
CGAP (NCI)Hs.296731
Alternative Splicing GalleryENSG00000197857
Gene ExpressionZNF44 [ NCBI-GEO ]   ZNF44 [ EBI - ARRAY_EXPRESS ]   ZNF44 [ SEEK ]   ZNF44 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51710
GTEX Portal (Tissue expression)ZNF44
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15621   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15621  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15621
Splice isoforms : SwissVarP15621
PhosPhoSitePlusP15621
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF44
DMDM Disease mutations51710
Blocks (Seattle)ZNF44
SuperfamilyP15621
Human Protein AtlasENSG00000197857
Peptide AtlasP15621
HPRD01927
IPIIPI00012504   IPI00924525   IPI00974554   IPI00639933   IPI00410610   IPI00871871   IPI00306144   
Protein Interaction databases
DIP (DOE-UCLA)P15621
IntAct (EBI)P15621
FunCoupENSG00000197857
BioGRIDZNF44
STRING (EMBL)ZNF44
ZODIACZNF44
Ontologies - Pathways
QuickGOP15621
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF44
Atlas of Cancer Signalling NetworkZNF44
Wikipedia pathwaysZNF44
Orthology - Evolution
OrthoDB51710
GeneTree (enSembl)ENSG00000197857
Phylogenetic Trees/Animal Genes : TreeFamZNF44
HOVERGENP15621
HOGENOMP15621
Homologs : HomoloGeneZNF44
Homology/Alignments : Family Browser (UCSC)ZNF44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF44
dbVarZNF44
ClinVarZNF44
1000_GenomesZNF44 
Exome Variant ServerZNF44
ExAC (Exome Aggregation Consortium)ZNF44 (select the gene name)
Genetic variants : HAPMAP51710
Genomic Variants (DGV)ZNF44 [DGVbeta]
DECIPHERZNF44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF44 
Mutations
ICGC Data PortalZNF44 
TCGA Data PortalZNF44 
Broad Tumor PortalZNF44
OASIS PortalZNF44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF44
DgiDB (Drug Gene Interaction Database)ZNF44
DoCM (Curated mutations)ZNF44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF44 (select a term)
intoGenZNF44
Cancer3DZNF44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194542   
Orphanet
MedgenZNF44
Genetic Testing Registry ZNF44
NextProtP15621 [Medical]
TSGene51710
GENETestsZNF44
Huge Navigator ZNF44 [HugePedia]
snp3D : Map Gene to Disease51710
BioCentury BCIQZNF44
ClinGenZNF44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51710
Chemical/Pharm GKB GenePA37685
Clinical trialZNF44
Miscellaneous
canSAR (ICR)ZNF44 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF44
EVEXZNF44
GoPubMedZNF44
iHOPZNF44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:03:00 CEST 2017

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