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ZNF440 (zinc finger protein 440)

Identity

Alias_symbol (synonym)FLJ37933
Other alias-
HGNC (Hugo) ZNF440
LocusID (NCBI) 126070
Atlas_Id 76159
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11814292 and ends at 11835201 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF440   20874
Cards
Entrez_Gene (NCBI)ZNF440  126070  zinc finger protein 440
Aliases
GeneCards (Weizmann)ZNF440
Ensembl hg19 (Hinxton)ENSG00000171295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171295 [Gene_View]  chr19:11814292-11835201 [Contig_View]  ZNF440 [Vega]
ICGC DataPortalENSG00000171295
TCGA cBioPortalZNF440
AceView (NCBI)ZNF440
Genatlas (Paris)ZNF440
WikiGenes126070
SOURCE (Princeton)ZNF440
Genetics Home Reference (NIH)ZNF440
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF440  -     chr19:11814292-11835201 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF440  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF440 - 19p13.2 [CytoView hg19]  ZNF440 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF440 [Mapview hg19]  ZNF440 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092559 AK095252 BC016371 BC035760 EU446565
RefSeq transcript (Entrez)NM_152357
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF440
Cluster EST : UnigeneHs.418192 [ NCBI ]
CGAP (NCI)Hs.418192
Alternative Splicing GalleryENSG00000171295
Gene ExpressionZNF440 [ NCBI-GEO ]   ZNF440 [ EBI - ARRAY_EXPRESS ]   ZNF440 [ SEEK ]   ZNF440 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF440 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126070
GTEX Portal (Tissue expression)ZNF440
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYI8
Splice isoforms : SwissVarQ8IYI8
PhosPhoSitePlusQ8IYI8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF440
DMDM Disease mutations126070
Blocks (Seattle)ZNF440
SuperfamilyQ8IYI8
Human Protein AtlasENSG00000171295
Peptide AtlasQ8IYI8
HPRD11718
IPIIPI00829765   IPI00807675   IPI00927817   IPI00927567   IPI00927332   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYI8
IntAct (EBI)Q8IYI8
FunCoupENSG00000171295
BioGRIDZNF440
STRING (EMBL)ZNF440
ZODIACZNF440
Ontologies - Pathways
QuickGOQ8IYI8
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF440
Atlas of Cancer Signalling NetworkZNF440
Wikipedia pathwaysZNF440
Orthology - Evolution
OrthoDB126070
GeneTree (enSembl)ENSG00000171295
Phylogenetic Trees/Animal Genes : TreeFamZNF440
HOVERGENQ8IYI8
HOGENOMQ8IYI8
Homologs : HomoloGeneZNF440
Homology/Alignments : Family Browser (UCSC)ZNF440
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF440 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF440
dbVarZNF440
ClinVarZNF440
1000_GenomesZNF440 
Exome Variant ServerZNF440
ExAC (Exome Aggregation Consortium)ZNF440 (select the gene name)
Genetic variants : HAPMAP126070
Genomic Variants (DGV)ZNF440 [DGVbeta]
DECIPHERZNF440 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF440 
Mutations
ICGC Data PortalZNF440 
TCGA Data PortalZNF440 
Broad Tumor PortalZNF440
OASIS PortalZNF440 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF440  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF440
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF440
DgiDB (Drug Gene Interaction Database)ZNF440
DoCM (Curated mutations)ZNF440 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF440 (select a term)
intoGenZNF440
Cancer3DZNF440(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF440
Genetic Testing Registry ZNF440
NextProtQ8IYI8 [Medical]
TSGene126070
GENETestsZNF440
Target ValidationZNF440
Huge Navigator ZNF440 [HugePedia]
snp3D : Map Gene to Disease126070
BioCentury BCIQZNF440
ClinGenZNF440
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126070
Chemical/Pharm GKB GenePA134917447
Clinical trialZNF440
Miscellaneous
canSAR (ICR)ZNF440 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF440
EVEXZNF440
GoPubMedZNF440
iHOPZNF440
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:27 CEST 2017

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