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ZNF442 (zinc finger protein 442)

Identity

Alias_symbol (synonym)FLJ14356
Other alias-
HGNC (Hugo) ZNF442
LocusID (NCBI) 79973
Atlas_Id 76161
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12349371 and ends at 12365661 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF442   20877
Cards
Entrez_Gene (NCBI)ZNF442  79973  zinc finger protein 442
Aliases
GeneCards (Weizmann)ZNF442
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:12349371-12365661 [Contig_View]  ZNF442 [Vega]
TCGA cBioPortalZNF442
AceView (NCBI)ZNF442
Genatlas (Paris)ZNF442
WikiGenes79973
SOURCE (Princeton)ZNF442
Genetics Home Reference (NIH)ZNF442
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF442  -     chr19:12349371-12365661 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF442  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF442 - 19p13.2 [CytoView hg19]  ZNF442 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF442 [Mapview hg19]  ZNF442 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024418 AK295923 DA151257
RefSeq transcript (Entrez)NM_030824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF442
Cluster EST : UnigeneHs.253193 [ NCBI ]
CGAP (NCI)Hs.253193
Gene ExpressionZNF442 [ NCBI-GEO ]   ZNF442 [ EBI - ARRAY_EXPRESS ]   ZNF442 [ SEEK ]   ZNF442 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF442 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79973
GTEX Portal (Tissue expression)ZNF442
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7R0
Splice isoforms : SwissVarQ9H7R0
PhosPhoSitePlusQ9H7R0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF442
DMDM Disease mutations79973
Blocks (Seattle)ZNF442
SuperfamilyQ9H7R0
Peptide AtlasQ9H7R0
HPRD15795
IPIIPI00006636   IPI00926720   IPI00926588   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7R0
IntAct (EBI)Q9H7R0
BioGRIDZNF442
STRING (EMBL)ZNF442
ZODIACZNF442
Ontologies - Pathways
QuickGOQ9H7R0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF442
Atlas of Cancer Signalling NetworkZNF442
Wikipedia pathwaysZNF442
Orthology - Evolution
OrthoDB79973
Phylogenetic Trees/Animal Genes : TreeFamZNF442
HOVERGENQ9H7R0
HOGENOMQ9H7R0
Homologs : HomoloGeneZNF442
Homology/Alignments : Family Browser (UCSC)ZNF442
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF442 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF442
dbVarZNF442
ClinVarZNF442
1000_GenomesZNF442 
Exome Variant ServerZNF442
ExAC (Exome Aggregation Consortium)ZNF442 (select the gene name)
Genetic variants : HAPMAP79973
Genomic Variants (DGV)ZNF442 [DGVbeta]
DECIPHERZNF442 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF442 
Mutations
ICGC Data PortalZNF442 
TCGA Data PortalZNF442 
Broad Tumor PortalZNF442
OASIS PortalZNF442 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF442  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF442
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF442
DgiDB (Drug Gene Interaction Database)ZNF442
DoCM (Curated mutations)ZNF442 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF442 (select a term)
intoGenZNF442
Cancer3DZNF442(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF442
Genetic Testing Registry ZNF442
NextProtQ9H7R0 [Medical]
TSGene79973
GENETestsZNF442
Target ValidationZNF442
Huge Navigator ZNF442 [HugePedia]
snp3D : Map Gene to Disease79973
BioCentury BCIQZNF442
ClinGenZNF442
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79973
Chemical/Pharm GKB GenePA134983440
Clinical trialZNF442
Miscellaneous
canSAR (ICR)ZNF442 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF442
EVEXZNF442
GoPubMedZNF442
iHOPZNF442
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:28 CEST 2017

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