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ZNF444 (zinc finger protein 444)

Identity

Other namesEZF-2
EZF2
ZSCAN17
HGNC (Hugo) ZNF444
LocusID (NCBI) 55311
Location 19q13.43
Location_base_pair Starts at 56652535 and ends at 56672262 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ZNF444   16052
Entrez_Gene (NCBI)ZNF444  55311  zinc finger protein 444
Cards
GeneCards (Weizmann)ZNF444
Ensembl (Hinxton)ENSG00000167685 [Gene_View]  chr19:56652535-56672262 [Contig_View]  ZNF444 [Vega]
AceView (NCBI)ZNF444
Genatlas (Paris)ZNF444
SOURCE (Stanford)NM_001253792 NM_018337
Genomic and cartography
GoldenPath (UCSC)ZNF444  -  19q13.43   chr19:56652535-56672262 +  19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF444 - 19q13.43 [CytoView]
Mapping of homologs : NCBIZNF444 [Mapview]
OMIM607874   
Gene and transcription
Genbank (Entrez)AB052954 AB052955 AF074985 AK001999 AK074063
RefSeq transcript (SRS)NM_001253792 NM_018337
RefSeq transcript (Entrez)NM_001253792 NM_018337
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838501 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838501 NW_004078099
Consensus coding sequences : CCDS (NCBI)ZNF444
Cluster EST : UnigeneHs.741890 [ SRS ] Hs.741890 [ NCBI ]
CGAP (NCI)Hs.741890
Alternative Splicing : Fast-db (Paris)GSHG0015222
Alternative Splicing GalleryENSG00000167685
Gene ExpressionZNF444 [ NCBI-GEO ]   ZNF444 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Y2 (SRS) Q8N0Y2 (Uniprot)
NextProtQ8N0Y2
With graphics : InterProQ8N0Y2
Splice isoforms : SwissVarQ8N0Y2(Swissvar)
Domaine pattern : Prosite (SRS)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ8N0Y2
Domain families : Pfam (SRS)SCAN (PF02023)   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
DMDM55311
Blocks (Seattle)Q8N0Y2
Human Protein AtlasENSG00000167685
HPRD08488
IPIIPI00019922   IPI00382777   IPI00977003   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Y2
IntAct (EBI)Q8N0Y2
FunCoupENSG00000167685
REACTOMEZNF444
Protein Interaction Database55311
BioGRIDZNF444
InParanoidQ8N0Y2
Interologous Interaction database Q8N0Y2
IntegromeDBZNF444
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZNF444
SNP (GeneSNP Utah)ZNF444
SNP : HGBaseZNF444
Genetic variants : HAPMAPZNF444
Somatic Mutations in Cancer : COSMICZNF444 
CONAN: Copy Number AnalysisZNF444 
Translocation Breakpoints in Cancer : TICdbZNF444 
Mutations and Diseases : HGMDZNF444
OMIM607874   
GENETests607874   
Disease Genetic AssociationZNF444
Huge Navigator ZNF444 [HugePedia]  ZNF444 [HugeCancerGEM]
Genomic VariantsZNF444  ZNF444 [DGVbeta]
ClinVarZNF444
snp3D : Map Gene to Disease55311
General knowledge
Homologs : HomoloGeneZNF444
Homology/Alignments : Family Browser (UCSC)ZNF444
Phylogenetic Trees/Animal Genes : TreeFamZNF444
Chemical/Protein Interactions : CTD55311
Chemical/Pharm GKB GenePA134984823
Clinical trialZNF444
Cancer Resource (Charite)ENSG00000167685
Ontology : AmiGOsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  zinc ion binding  viral reproduction  
Ontology : EGO-EBIsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  zinc ion binding  viral reproduction  
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
PubGeneZNF444
iHOPZNF444
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:26:50 CEST 2013
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