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ZNF444 (zinc finger protein 444)

Identity

Alias_symbol (synonym)ZSCAN17
FLJ11137
EZF2
Other aliasEZF-2
HGNC (Hugo) ZNF444
LocusID (NCBI) 55311
Atlas_Id 51311
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56141166 and ends at 56160893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EWSR1 (22q12.2) / ZNF444 (19q13.43)EWSR1 22q12.2 / ZNF444 19q13.43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  Soft Tissues: Malignant Myoepithelioma
Soft tissue tumors: an overview
Soft Tissues: Myoepithelial carcinoma with t(19;22)(q13;q12) EWSR1/ZNF444


External links

Nomenclature
HGNC (Hugo)ZNF444   16052
Cards
Entrez_Gene (NCBI)ZNF444  55311  zinc finger protein 444
AliasesEZF-2; EZF2; ZSCAN17
GeneCards (Weizmann)ZNF444
Ensembl hg19 (Hinxton)ENSG00000167685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167685 [Gene_View]  chr19:56141166-56160893 [Contig_View]  ZNF444 [Vega]
ICGC DataPortalENSG00000167685
TCGA cBioPortalZNF444
AceView (NCBI)ZNF444
Genatlas (Paris)ZNF444
WikiGenes55311
SOURCE (Princeton)ZNF444
Genetics Home Reference (NIH)ZNF444
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF444  -     chr19:56141166-56160893 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF444  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF444 - 19q13.43 [CytoView hg19]  ZNF444 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF444 [Mapview hg19]  ZNF444 [Mapview hg38]
OMIM607874   
Gene and transcription
Genbank (Entrez)AB052954 AB052955 AF074985 AK001999 AK074063
RefSeq transcript (Entrez)NM_001253792 NM_018337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF444
Cluster EST : UnigeneHs.741890 [ NCBI ]
CGAP (NCI)Hs.741890
Alternative Splicing GalleryENSG00000167685
Gene ExpressionZNF444 [ NCBI-GEO ]   ZNF444 [ EBI - ARRAY_EXPRESS ]   ZNF444 [ SEEK ]   ZNF444 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF444 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55311
GTEX Portal (Tissue expression)ZNF444
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Y2
Splice isoforms : SwissVarQ8N0Y2
PhosPhoSitePlusQ8N0Y2
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF444
DMDM Disease mutations55311
Blocks (Seattle)ZNF444
SuperfamilyQ8N0Y2
Human Protein AtlasENSG00000167685
Peptide AtlasQ8N0Y2
HPRD08488
IPIIPI00019922   IPI00382777   IPI00977003   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Y2
IntAct (EBI)Q8N0Y2
FunCoupENSG00000167685
BioGRIDZNF444
STRING (EMBL)ZNF444
ZODIACZNF444
Ontologies - Pathways
QuickGOQ8N0Y2
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF444
Atlas of Cancer Signalling NetworkZNF444
Wikipedia pathwaysZNF444
Orthology - Evolution
OrthoDB55311
GeneTree (enSembl)ENSG00000167685
Phylogenetic Trees/Animal Genes : TreeFamZNF444
HOVERGENQ8N0Y2
HOGENOMQ8N0Y2
Homologs : HomoloGeneZNF444
Homology/Alignments : Family Browser (UCSC)ZNF444
Gene fusions - Rearrangements
Fusion : MitelmanEWSR1/ZNF444 [22q12.2/19q13.43]  [t(19;22)(q13;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF444 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF444
dbVarZNF444
ClinVarZNF444
1000_GenomesZNF444 
Exome Variant ServerZNF444
ExAC (Exome Aggregation Consortium)ZNF444 (select the gene name)
Genetic variants : HAPMAP55311
Genomic Variants (DGV)ZNF444 [DGVbeta]
DECIPHERZNF444 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF444 
Mutations
ICGC Data PortalZNF444 
TCGA Data PortalZNF444 
Broad Tumor PortalZNF444
OASIS PortalZNF444 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF444  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF444
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF444
DgiDB (Drug Gene Interaction Database)ZNF444
DoCM (Curated mutations)ZNF444 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF444 (select a term)
intoGenZNF444
Cancer3DZNF444(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607874   
Orphanet
MedgenZNF444
Genetic Testing Registry ZNF444
NextProtQ8N0Y2 [Medical]
TSGene55311
GENETestsZNF444
Target ValidationZNF444
Huge Navigator ZNF444 [HugePedia]
snp3D : Map Gene to Disease55311
BioCentury BCIQZNF444
ClinGenZNF444
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55311
Chemical/Pharm GKB GenePA134984823
Clinical trialZNF444
Miscellaneous
canSAR (ICR)ZNF444 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF444
EVEXZNF444
GoPubMedZNF444
iHOPZNF444
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:39:16 CEST 2017

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