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ZNF445 (zinc finger protein 445)

Identity

Alias_namesZNF168
zinc finger protein 168
Alias_symbol (synonym)ZKSCAN15
ZSCAN47
Other alias
HGNC (Hugo) ZNF445
LocusID (NCBI) 353274
Atlas_Id 76163
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44439770 and ends at 44477670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUSAP1 (15q15.1) / ZNF445 (3p21.31)ZNF445 (3p21.31) / ANAPC16 (10q22.1)ZNF445 (3p21.31) / BRD2 (6p21.32)
ZNF445 (3p21.31) / LINC00694 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF445   21018
Cards
Entrez_Gene (NCBI)ZNF445  353274  zinc finger protein 445
AliasesZKSCAN15; ZNF168; ZSCAN47
GeneCards (Weizmann)ZNF445
Ensembl hg19 (Hinxton)ENSG00000185219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185219 [Gene_View]  chr3:44439770-44477670 [Contig_View]  ZNF445 [Vega]
ICGC DataPortalENSG00000185219
TCGA cBioPortalZNF445
AceView (NCBI)ZNF445
Genatlas (Paris)ZNF445
WikiGenes353274
SOURCE (Princeton)ZNF445
Genetics Home Reference (NIH)ZNF445
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF445  -     chr3:44439770-44477670 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF445  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF445 - 3p21.31 [CytoView hg19]  ZNF445 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF445 [Mapview hg19]  ZNF445 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026891 AK310588 AL832553 AY262260 AY279350
RefSeq transcript (Entrez)NM_181489
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF445
Cluster EST : UnigeneHs.250481 [ NCBI ]
CGAP (NCI)Hs.250481
Alternative Splicing GalleryENSG00000185219
Gene ExpressionZNF445 [ NCBI-GEO ]   ZNF445 [ EBI - ARRAY_EXPRESS ]   ZNF445 [ SEEK ]   ZNF445 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF445 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353274
GTEX Portal (Tissue expression)ZNF445
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59923   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59923  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59923
Splice isoforms : SwissVarP59923
PhosPhoSitePlusP59923
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF445
DMDM Disease mutations353274
Blocks (Seattle)ZNF445
SuperfamilyP59923
Human Protein AtlasENSG00000185219
Peptide AtlasP59923
HPRD11719
IPIIPI00377116   IPI00940854   IPI00018776   
Protein Interaction databases
DIP (DOE-UCLA)P59923
IntAct (EBI)P59923
FunCoupENSG00000185219
BioGRIDZNF445
STRING (EMBL)ZNF445
ZODIACZNF445
Ontologies - Pathways
QuickGOP59923
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  extracellular exosome  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  extracellular exosome  
NDEx NetworkZNF445
Atlas of Cancer Signalling NetworkZNF445
Wikipedia pathwaysZNF445
Orthology - Evolution
OrthoDB353274
GeneTree (enSembl)ENSG00000185219
Phylogenetic Trees/Animal Genes : TreeFamZNF445
HOVERGENP59923
HOGENOMP59923
Homologs : HomoloGeneZNF445
Homology/Alignments : Family Browser (UCSC)ZNF445
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF445 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF445
dbVarZNF445
ClinVarZNF445
1000_GenomesZNF445 
Exome Variant ServerZNF445
ExAC (Exome Aggregation Consortium)ZNF445 (select the gene name)
Genetic variants : HAPMAP353274
Genomic Variants (DGV)ZNF445 [DGVbeta]
DECIPHERZNF445 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF445 
Mutations
ICGC Data PortalZNF445 
TCGA Data PortalZNF445 
Broad Tumor PortalZNF445
OASIS PortalZNF445 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF445  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF445
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF445
DgiDB (Drug Gene Interaction Database)ZNF445
DoCM (Curated mutations)ZNF445 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF445 (select a term)
intoGenZNF445
Cancer3DZNF445(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF445
Genetic Testing Registry ZNF445
NextProtP59923 [Medical]
TSGene353274
GENETestsZNF445
Target ValidationZNF445
Huge Navigator ZNF445 [HugePedia]
snp3D : Map Gene to Disease353274
BioCentury BCIQZNF445
ClinGenZNF445
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353274
Chemical/Pharm GKB GenePA134904986
Clinical trialZNF445
Miscellaneous
canSAR (ICR)ZNF445 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF445
EVEXZNF445
GoPubMedZNF445
iHOPZNF445
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:46 CEST 2017

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