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ZNF449 (zinc finger protein 449)

Identity

Alias_symbol (synonym)ZSCAN19
FLJ23614
Other alias
HGNC (Hugo) ZNF449
LocusID (NCBI) 203523
Atlas_Id 76165
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134478696 and ends at 134497338 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF449   21039
Cards
Entrez_Gene (NCBI)ZNF449  203523  zinc finger protein 449
AliasesZSCAN19
GeneCards (Weizmann)ZNF449
Ensembl hg19 (Hinxton)ENSG00000173275 [Gene_View]  chrX:134478696-134497338 [Contig_View]  ZNF449 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173275 [Gene_View]  chrX:134478696-134497338 [Contig_View]  ZNF449 [Vega]
ICGC DataPortalENSG00000173275
TCGA cBioPortalZNF449
AceView (NCBI)ZNF449
Genatlas (Paris)ZNF449
WikiGenes203523
SOURCE (Princeton)ZNF449
Genetics Home Reference (NIH)ZNF449
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF449  -     chrX:134478696-134497338 +  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF449  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblZNF449 - Xq26.3 [CytoView hg19]  ZNF449 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIZNF449 [Mapview hg19]  ZNF449 [Mapview hg38]
OMIM300627   
Gene and transcription
Genbank (Entrez)AK002078 AK074194 AK314344 AL832169 AL833109
RefSeq transcript (Entrez)NM_152695
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021220 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ZNF449
Cluster EST : UnigeneHs.28780 [ NCBI ]
CGAP (NCI)Hs.28780
Alternative Splicing GalleryENSG00000173275
Gene ExpressionZNF449 [ NCBI-GEO ]   ZNF449 [ EBI - ARRAY_EXPRESS ]   ZNF449 [ SEEK ]   ZNF449 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF449 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203523
GTEX Portal (Tissue expression)ZNF449
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9G9
Splice isoforms : SwissVarQ6P9G9
PhosPhoSitePlusQ6P9G9
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF449
DMDM Disease mutations203523
Blocks (Seattle)ZNF449
SuperfamilyQ6P9G9
Human Protein AtlasENSG00000173275
Peptide AtlasQ6P9G9
HPRD06543
IPIIPI00166585   IPI00152713   IPI00434168   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9G9
IntAct (EBI)Q6P9G9
FunCoupENSG00000173275
BioGRIDZNF449
STRING (EMBL)ZNF449
ZODIACZNF449
Ontologies - Pathways
QuickGOQ6P9G9
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF449
Atlas of Cancer Signalling NetworkZNF449
Wikipedia pathwaysZNF449
Orthology - Evolution
OrthoDB203523
GeneTree (enSembl)ENSG00000173275
Phylogenetic Trees/Animal Genes : TreeFamZNF449
HOVERGENQ6P9G9
HOGENOMQ6P9G9
Homologs : HomoloGeneZNF449
Homology/Alignments : Family Browser (UCSC)ZNF449
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF449 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF449
dbVarZNF449
ClinVarZNF449
1000_GenomesZNF449 
Exome Variant ServerZNF449
ExAC (Exome Aggregation Consortium)ZNF449 (select the gene name)
Genetic variants : HAPMAP203523
Genomic Variants (DGV)ZNF449 [DGVbeta]
DECIPHER (Syndromes)X:134478696-134497338  ENSG00000173275
CONAN: Copy Number AnalysisZNF449 
Mutations
ICGC Data PortalZNF449 
TCGA Data PortalZNF449 
Broad Tumor PortalZNF449
OASIS PortalZNF449 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF449  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF449
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZNF449
DgiDB (Drug Gene Interaction Database)ZNF449
DoCM (Curated mutations)ZNF449 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF449 (select a term)
intoGenZNF449
Cancer3DZNF449(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300627   
Orphanet
MedgenZNF449
Genetic Testing Registry ZNF449
NextProtQ6P9G9 [Medical]
TSGene203523
GENETestsZNF449
Huge Navigator ZNF449 [HugePedia]
snp3D : Map Gene to Disease203523
BioCentury BCIQZNF449
ClinGenZNF449
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203523
Chemical/Pharm GKB GenePA134920699
Clinical trialZNF449
Miscellaneous
canSAR (ICR)ZNF449 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF449
EVEXZNF449
GoPubMedZNF449
iHOPZNF449
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:04 CET 2017

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