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ZNF45 (zinc finger protein 45)

Identity

Alias_namesZNF13
zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide)
zinc finger protein 13
Other aliasKOX5
HGNC (Hugo) ZNF45
LocusID (NCBI) 7596
Atlas_Id 76166
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43912624 and ends at 43935259 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF45   13111
Cards
Entrez_Gene (NCBI)ZNF45  7596  zinc finger protein 45
AliasesKOX5; ZNF13
GeneCards (Weizmann)ZNF45
Ensembl hg19 (Hinxton)ENSG00000124459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124459 [Gene_View]  chr19:43912624-43935259 [Contig_View]  ZNF45 [Vega]
ICGC DataPortalENSG00000124459
TCGA cBioPortalZNF45
AceView (NCBI)ZNF45
Genatlas (Paris)ZNF45
WikiGenes7596
SOURCE (Princeton)ZNF45
Genetics Home Reference (NIH)ZNF45
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF45  -     chr19:43912624-43935259 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF45  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF45 - 19q13.31 [CytoView hg19]  ZNF45 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF45 [Mapview hg19]  ZNF45 [Mapview hg38]
OMIM194554   
Gene and transcription
Genbank (Entrez)AK127739 BC037575 EU446911 L75847 M67509
RefSeq transcript (Entrez)NM_003425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF45
Cluster EST : UnigeneHs.381285 [ NCBI ]
CGAP (NCI)Hs.381285
Alternative Splicing GalleryENSG00000124459
Gene ExpressionZNF45 [ NCBI-GEO ]   ZNF45 [ EBI - ARRAY_EXPRESS ]   ZNF45 [ SEEK ]   ZNF45 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7596
GTEX Portal (Tissue expression)ZNF45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02386   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02386  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02386
Splice isoforms : SwissVarQ02386
PhosPhoSitePlusQ02386
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF45
DMDM Disease mutations7596
Blocks (Seattle)ZNF45
SuperfamilyQ02386
Human Protein AtlasENSG00000124459
Peptide AtlasQ02386
HPRD03469
IPIIPI00025417   IPI00444117   
Protein Interaction databases
DIP (DOE-UCLA)Q02386
IntAct (EBI)Q02386
FunCoupENSG00000124459
BioGRIDZNF45
STRING (EMBL)ZNF45
ZODIACZNF45
Ontologies - Pathways
QuickGOQ02386
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  multicellular organism development  metal ion binding  
NDEx NetworkZNF45
Atlas of Cancer Signalling NetworkZNF45
Wikipedia pathwaysZNF45
Orthology - Evolution
OrthoDB7596
GeneTree (enSembl)ENSG00000124459
Phylogenetic Trees/Animal Genes : TreeFamZNF45
HOVERGENQ02386
HOGENOMQ02386
Homologs : HomoloGeneZNF45
Homology/Alignments : Family Browser (UCSC)ZNF45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF45
dbVarZNF45
ClinVarZNF45
1000_GenomesZNF45 
Exome Variant ServerZNF45
ExAC (Exome Aggregation Consortium)ZNF45 (select the gene name)
Genetic variants : HAPMAP7596
Genomic Variants (DGV)ZNF45 [DGVbeta]
DECIPHERZNF45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF45 
Mutations
ICGC Data PortalZNF45 
TCGA Data PortalZNF45 
Broad Tumor PortalZNF45
OASIS PortalZNF45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF45
DgiDB (Drug Gene Interaction Database)ZNF45
DoCM (Curated mutations)ZNF45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF45 (select a term)
intoGenZNF45
Cancer3DZNF45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194554   
Orphanet
MedgenZNF45
Genetic Testing Registry ZNF45
NextProtQ02386 [Medical]
TSGene7596
GENETestsZNF45
Target ValidationZNF45
Huge Navigator ZNF45 [HugePedia]
snp3D : Map Gene to Disease7596
BioCentury BCIQZNF45
ClinGenZNF45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7596
Chemical/Pharm GKB GenePA37686
Clinical trialZNF45
Miscellaneous
canSAR (ICR)ZNF45 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF45
EVEXZNF45
GoPubMedZNF45
iHOPZNF45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:47 CEST 2017

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