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ZNF454 (zinc finger protein 454)

Identity

Alias_symbol (synonym)FLJ37444
Other alias-
HGNC (Hugo) ZNF454
LocusID (NCBI) 285676
Atlas_Id 76167
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178941191 and ends at 178966433 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF454   21200
Cards
Entrez_Gene (NCBI)ZNF454  285676  zinc finger protein 454
Aliases
GeneCards (Weizmann)ZNF454
Ensembl hg19 (Hinxton)ENSG00000178187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178187 [Gene_View]  chr5:178941191-178966433 [Contig_View]  ZNF454 [Vega]
ICGC DataPortalENSG00000178187
TCGA cBioPortalZNF454
AceView (NCBI)ZNF454
Genatlas (Paris)ZNF454
WikiGenes285676
SOURCE (Princeton)ZNF454
Genetics Home Reference (NIH)ZNF454
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF454  -     chr5:178941191-178966433 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF454  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblZNF454 - 5q35.3 [CytoView hg19]  ZNF454 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIZNF454 [Mapview hg19]  ZNF454 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094763 AK292317 BC105061 BC112276 DA081954
RefSeq transcript (Entrez)NM_001178089 NM_001178090 NM_001323306 NM_001323307 NM_001323308 NM_001323309 NM_001323310 NM_182594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF454
Cluster EST : UnigeneHs.259441 [ NCBI ]
CGAP (NCI)Hs.259441
Alternative Splicing GalleryENSG00000178187
Gene ExpressionZNF454 [ NCBI-GEO ]   ZNF454 [ EBI - ARRAY_EXPRESS ]   ZNF454 [ SEEK ]   ZNF454 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF454 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285676
GTEX Portal (Tissue expression)ZNF454
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9F8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9F8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9F8
Splice isoforms : SwissVarQ8N9F8
PhosPhoSitePlusQ8N9F8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF454
DMDM Disease mutations285676
Blocks (Seattle)ZNF454
SuperfamilyQ8N9F8
Human Protein AtlasENSG00000178187
Peptide AtlasQ8N9F8
HPRD15796
IPIIPI00298536   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9F8
IntAct (EBI)Q8N9F8
FunCoupENSG00000178187
BioGRIDZNF454
STRING (EMBL)ZNF454
ZODIACZNF454
Ontologies - Pathways
QuickGOQ8N9F8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF454
Atlas of Cancer Signalling NetworkZNF454
Wikipedia pathwaysZNF454
Orthology - Evolution
OrthoDB285676
GeneTree (enSembl)ENSG00000178187
Phylogenetic Trees/Animal Genes : TreeFamZNF454
HOVERGENQ8N9F8
HOGENOMQ8N9F8
Homologs : HomoloGeneZNF454
Homology/Alignments : Family Browser (UCSC)ZNF454
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF454 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF454
dbVarZNF454
ClinVarZNF454
1000_GenomesZNF454 
Exome Variant ServerZNF454
ExAC (Exome Aggregation Consortium)ZNF454 (select the gene name)
Genetic variants : HAPMAP285676
Genomic Variants (DGV)ZNF454 [DGVbeta]
DECIPHERZNF454 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF454 
Mutations
ICGC Data PortalZNF454 
TCGA Data PortalZNF454 
Broad Tumor PortalZNF454
OASIS PortalZNF454 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF454  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF454
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF454
DgiDB (Drug Gene Interaction Database)ZNF454
DoCM (Curated mutations)ZNF454 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF454 (select a term)
intoGenZNF454
Cancer3DZNF454(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF454
Genetic Testing Registry ZNF454
NextProtQ8N9F8 [Medical]
TSGene285676
GENETestsZNF454
Target ValidationZNF454
Huge Navigator ZNF454 [HugePedia]
snp3D : Map Gene to Disease285676
BioCentury BCIQZNF454
ClinGenZNF454
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285676
Chemical/Pharm GKB GenePA134974337
Clinical trialZNF454
Miscellaneous
canSAR (ICR)ZNF454 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF454
EVEXZNF454
GoPubMedZNF454
iHOPZNF454
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:47 CEST 2017

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