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ZNF461 (zinc finger protein 461)

Identity

Alias_symbol (synonym)GIOT-1
MGC33911
Other aliasGIOT1
HZF28
HGNC (Hugo) ZNF461
LocusID (NCBI) 92283
Atlas_Id 76169
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36636621 and ends at 36666853 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF461 (19q13.12) / LRRC28 (15q26.3)ZNF461 (19q13.12) / MATN2 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF461   21629
Cards
Entrez_Gene (NCBI)ZNF461  92283  zinc finger protein 461
AliasesGIOT-1; GIOT1; HZF28
GeneCards (Weizmann)ZNF461
Ensembl hg19 (Hinxton)ENSG00000197808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197808 [Gene_View]  chr19:36636621-36666853 [Contig_View]  ZNF461 [Vega]
ICGC DataPortalENSG00000197808
TCGA cBioPortalZNF461
AceView (NCBI)ZNF461
Genatlas (Paris)ZNF461
WikiGenes92283
SOURCE (Princeton)ZNF461
Genetics Home Reference (NIH)ZNF461
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF461  -     chr19:36636621-36666853 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF461  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF461 - 19q13.12 [CytoView hg19]  ZNF461 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF461 [Mapview hg19]  ZNF461 [Mapview hg38]
OMIM608640   
Gene and transcription
Genbank (Entrez)AB021641 AB209279 AK292834 AK299370 AY329493
RefSeq transcript (Entrez)NM_001297623 NM_001322821 NM_001322823 NM_001322825 NM_001322826 NM_001322827 NM_001322828 NM_153257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF461
Cluster EST : UnigeneHs.590972 [ NCBI ]
CGAP (NCI)Hs.590972
Alternative Splicing GalleryENSG00000197808
Gene ExpressionZNF461 [ NCBI-GEO ]   ZNF461 [ EBI - ARRAY_EXPRESS ]   ZNF461 [ SEEK ]   ZNF461 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF461 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92283
GTEX Portal (Tissue expression)ZNF461
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAF7
Splice isoforms : SwissVarQ8TAF7
PhosPhoSitePlusQ8TAF7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF461
DMDM Disease mutations92283
Blocks (Seattle)ZNF461
SuperfamilyQ8TAF7
Human Protein AtlasENSG00000197808
Peptide AtlasQ8TAF7
HPRD16358
IPIIPI00152053   IPI00878549   IPI01015377   IPI00432560   IPI00796573   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAF7
IntAct (EBI)Q8TAF7
FunCoupENSG00000197808
BioGRIDZNF461
STRING (EMBL)ZNF461
ZODIACZNF461
Ontologies - Pathways
QuickGOQ8TAF7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF461
Atlas of Cancer Signalling NetworkZNF461
Wikipedia pathwaysZNF461
Orthology - Evolution
OrthoDB92283
GeneTree (enSembl)ENSG00000197808
Phylogenetic Trees/Animal Genes : TreeFamZNF461
HOVERGENQ8TAF7
HOGENOMQ8TAF7
Homologs : HomoloGeneZNF461
Homology/Alignments : Family Browser (UCSC)ZNF461
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF461 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF461
dbVarZNF461
ClinVarZNF461
1000_GenomesZNF461 
Exome Variant ServerZNF461
ExAC (Exome Aggregation Consortium)ZNF461 (select the gene name)
Genetic variants : HAPMAP92283
Genomic Variants (DGV)ZNF461 [DGVbeta]
DECIPHERZNF461 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF461 
Mutations
ICGC Data PortalZNF461 
TCGA Data PortalZNF461 
Broad Tumor PortalZNF461
OASIS PortalZNF461 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF461  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF461
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF461
DgiDB (Drug Gene Interaction Database)ZNF461
DoCM (Curated mutations)ZNF461 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF461 (select a term)
intoGenZNF461
Cancer3DZNF461(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608640   
Orphanet
MedgenZNF461
Genetic Testing Registry ZNF461
NextProtQ8TAF7 [Medical]
TSGene92283
GENETestsZNF461
Target ValidationZNF461
Huge Navigator ZNF461 [HugePedia]
snp3D : Map Gene to Disease92283
BioCentury BCIQZNF461
ClinGenZNF461
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92283
Chemical/Pharm GKB GenePA145149895
Clinical trialZNF461
Miscellaneous
canSAR (ICR)ZNF461 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF461
EVEXZNF461
GoPubMedZNF461
iHOPZNF461
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:47 CEST 2017

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