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ZNF462 (zinc finger protein 462)

Identity

Alias_symbol (synonym)DKFZP762N2316
KIAA1803
Zfp462
Other alias
HGNC (Hugo) ZNF462
LocusID (NCBI) 58499
Atlas_Id 76170
Location 9q31.2  [Link to chromosome band 9q31]
Location_base_pair Starts at 106863097 and ends at 107013634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASXL2 (2p23.3) / ZNF462 (9q31.2)CACNA1I (22q13.1) / ZNF462 (9q31.2)GPR161 (1q24.2) / ZNF462 (9q31.2)
PRDX2 (19p13.2) / ZNF462 (9q31.2)RUFY3 (4q13.3) / ZNF462 (9q31.2)ZNF462 (9q31.2) / ARL17A (17q21.31)
ZNF462 (9q31.2) / DNAJC1 (10p12.31)ZNF462 (9q31.2) / RIMS2 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF462   21684
Cards
Entrez_Gene (NCBI)ZNF462  58499  zinc finger protein 462
AliasesZfp462
GeneCards (Weizmann)ZNF462
Ensembl hg19 (Hinxton)ENSG00000148143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148143 [Gene_View]  chr9:106863097-107013634 [Contig_View]  ZNF462 [Vega]
ICGC DataPortalENSG00000148143
TCGA cBioPortalZNF462
AceView (NCBI)ZNF462
Genatlas (Paris)ZNF462
WikiGenes58499
SOURCE (Princeton)ZNF462
Genetics Home Reference (NIH)ZNF462
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF462  -     chr9:106863097-107013634 +  9q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF462  -     9q31.2   [Description]    (hg19-Feb_2009)
EnsemblZNF462 - 9q31.2 [CytoView hg19]  ZNF462 - 9q31.2 [CytoView hg38]
Mapping of homologs : NCBIZNF462 [Mapview hg19]  ZNF462 [Mapview hg38]
OMIM617371   
Gene and transcription
Genbank (Entrez)AB058706 AK027866 AK127803 AK302007 AL359561
RefSeq transcript (Entrez)NM_001347997 NM_021224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF462
Cluster EST : UnigeneHs.594002 [ NCBI ]
CGAP (NCI)Hs.594002
Alternative Splicing GalleryENSG00000148143
Gene ExpressionZNF462 [ NCBI-GEO ]   ZNF462 [ EBI - ARRAY_EXPRESS ]   ZNF462 [ SEEK ]   ZNF462 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF462 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58499
GTEX Portal (Tissue expression)ZNF462
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JM2
Splice isoforms : SwissVarQ96JM2
PhosPhoSitePlusQ96JM2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF462
DMDM Disease mutations58499
Blocks (Seattle)ZNF462
PDB (SRS)1X6F   
PDB (PDBSum)1X6F   
PDB (IMB)1X6F   
PDB (RSDB)1X6F   
Structural Biology KnowledgeBase1X6F   
SCOP (Structural Classification of Proteins)1X6F   
CATH (Classification of proteins structures)1X6F   
SuperfamilyQ96JM2
Human Protein AtlasENSG00000148143
Peptide AtlasQ96JM2
HPRD10333
IPIIPI00852632   IPI00915450   IPI00792933   IPI00552912   
Protein Interaction databases
DIP (DOE-UCLA)Q96JM2
IntAct (EBI)Q96JM2
FunCoupENSG00000148143
BioGRIDZNF462
STRING (EMBL)ZNF462
ZODIACZNF462
Ontologies - Pathways
QuickGOQ96JM2
Ontology : AmiGODNA binding  protein binding  nucleus  chromatin organization  transcription, DNA-templated  negative regulation of DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  chromatin organization  transcription, DNA-templated  negative regulation of DNA binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF462
Atlas of Cancer Signalling NetworkZNF462
Wikipedia pathwaysZNF462
Orthology - Evolution
OrthoDB58499
GeneTree (enSembl)ENSG00000148143
Phylogenetic Trees/Animal Genes : TreeFamZNF462
HOVERGENQ96JM2
HOGENOMQ96JM2
Homologs : HomoloGeneZNF462
Homology/Alignments : Family Browser (UCSC)ZNF462
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF462 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF462
dbVarZNF462
ClinVarZNF462
1000_GenomesZNF462 
Exome Variant ServerZNF462
ExAC (Exome Aggregation Consortium)ZNF462 (select the gene name)
Genetic variants : HAPMAP58499
Genomic Variants (DGV)ZNF462 [DGVbeta]
DECIPHERZNF462 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF462 
Mutations
ICGC Data PortalZNF462 
TCGA Data PortalZNF462 
Broad Tumor PortalZNF462
OASIS PortalZNF462 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF462  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF462
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF462
DgiDB (Drug Gene Interaction Database)ZNF462
DoCM (Curated mutations)ZNF462 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF462 (select a term)
intoGenZNF462
Cancer3DZNF462(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617371   
Orphanet
MedgenZNF462
Genetic Testing Registry ZNF462
NextProtQ96JM2 [Medical]
TSGene58499
GENETestsZNF462
Target ValidationZNF462
Huge Navigator ZNF462 [HugePedia]
snp3D : Map Gene to Disease58499
BioCentury BCIQZNF462
ClinGenZNF462
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58499
Chemical/Pharm GKB GenePA134949139
Clinical trialZNF462
Miscellaneous
canSAR (ICR)ZNF462 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF462
EVEXZNF462
GoPubMedZNF462
iHOPZNF462
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:30 CEST 2017

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