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ZNF468 (zinc finger protein 468)

Identity

Other alias-
HGNC (Hugo) ZNF468
LocusID (NCBI) 90333
Atlas_Id 76172
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52838532 and ends at 52857649 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF468   33105
Cards
Entrez_Gene (NCBI)ZNF468  90333  zinc finger protein 468
Aliases
GeneCards (Weizmann)ZNF468
Ensembl hg19 (Hinxton)ENSG00000204604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204604 [Gene_View]  chr19:52838532-52857649 [Contig_View]  ZNF468 [Vega]
ICGC DataPortalENSG00000204604
TCGA cBioPortalZNF468
AceView (NCBI)ZNF468
Genatlas (Paris)ZNF468
WikiGenes90333
SOURCE (Princeton)ZNF468
Genetics Home Reference (NIH)ZNF468
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF468  -     chr19:52838532-52857649 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF468  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF468 - 19q13.41 [CytoView hg19]  ZNF468 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF468 [Mapview hg19]  ZNF468 [Mapview hg38]
OMIM616841   
Gene and transcription
Genbank (Entrez)AK023558 AK025501 AK289841 AK292449 AY442330
RefSeq transcript (Entrez)NM_001008801 NM_001277120 NM_199132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF468
Cluster EST : UnigeneHs.467223 [ NCBI ]
CGAP (NCI)Hs.467223
Alternative Splicing GalleryENSG00000204604
Gene ExpressionZNF468 [ NCBI-GEO ]   ZNF468 [ EBI - ARRAY_EXPRESS ]   ZNF468 [ SEEK ]   ZNF468 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF468 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90333
GTEX Portal (Tissue expression)ZNF468
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VIY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VIY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VIY5
Splice isoforms : SwissVarQ5VIY5
PhosPhoSitePlusQ5VIY5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF468
DMDM Disease mutations90333
Blocks (Seattle)ZNF468
SuperfamilyQ5VIY5
Human Protein AtlasENSG00000204604
Peptide AtlasQ5VIY5
HPRD18344
IPIIPI00470717   IPI00549703   IPI00440753   IPI00874061   IPI00978770   
Protein Interaction databases
DIP (DOE-UCLA)Q5VIY5
IntAct (EBI)Q5VIY5
FunCoupENSG00000204604
BioGRIDZNF468
STRING (EMBL)ZNF468
ZODIACZNF468
Ontologies - Pathways
QuickGOQ5VIY5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF468
Atlas of Cancer Signalling NetworkZNF468
Wikipedia pathwaysZNF468
Orthology - Evolution
OrthoDB90333
GeneTree (enSembl)ENSG00000204604
Phylogenetic Trees/Animal Genes : TreeFamZNF468
HOVERGENQ5VIY5
HOGENOMQ5VIY5
Homologs : HomoloGeneZNF468
Homology/Alignments : Family Browser (UCSC)ZNF468
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF468 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF468
dbVarZNF468
ClinVarZNF468
1000_GenomesZNF468 
Exome Variant ServerZNF468
ExAC (Exome Aggregation Consortium)ZNF468 (select the gene name)
Genetic variants : HAPMAP90333
Genomic Variants (DGV)ZNF468 [DGVbeta]
DECIPHERZNF468 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF468 
Mutations
ICGC Data PortalZNF468 
TCGA Data PortalZNF468 
Broad Tumor PortalZNF468
OASIS PortalZNF468 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF468  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF468
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF468
DgiDB (Drug Gene Interaction Database)ZNF468
DoCM (Curated mutations)ZNF468 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF468 (select a term)
intoGenZNF468
Cancer3DZNF468(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616841   
Orphanet
MedgenZNF468
Genetic Testing Registry ZNF468
NextProtQ5VIY5 [Medical]
TSGene90333
GENETestsZNF468
Target ValidationZNF468
Huge Navigator ZNF468 [HugePedia]
snp3D : Map Gene to Disease90333
BioCentury BCIQZNF468
ClinGenZNF468
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90333
Chemical/Pharm GKB GenePA162410166
Clinical trialZNF468
Miscellaneous
canSAR (ICR)ZNF468 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF468
EVEXZNF468
GoPubMedZNF468
iHOPZNF468
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:30 CEST 2017

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