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ZNF469 (zinc finger protein 469)

Identity

Alias_symbol (synonym)KIAA1858
Other aliasBCS
BCS1
HGNC (Hugo) ZNF469
LocusID (NCBI) 84627
Atlas_Id 76173
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88427471 and ends at 88440757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF469 (16q24.2) / ZFPM1 (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF469   23216
Cards
Entrez_Gene (NCBI)ZNF469  84627  zinc finger protein 469
AliasesBCS; BCS1
GeneCards (Weizmann)ZNF469
Ensembl hg19 (Hinxton)ENSG00000225614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225614 [Gene_View]  chr16:88427471-88440757 [Contig_View]  ZNF469 [Vega]
ICGC DataPortalENSG00000225614
TCGA cBioPortalZNF469
AceView (NCBI)ZNF469
Genatlas (Paris)ZNF469
WikiGenes84627
SOURCE (Princeton)ZNF469
Genetics Home Reference (NIH)ZNF469
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF469  -     chr16:88427471-88440757 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF469  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblZNF469 - 16q24.2 [CytoView hg19]  ZNF469 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIZNF469 [Mapview hg19]  ZNF469 [Mapview hg38]
OMIM229200   612078   
Gene and transcription
Genbank (Entrez)AB058761
RefSeq transcript (Entrez)NM_001127464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF469
Cluster EST : UnigeneHs.54925 [ NCBI ]
CGAP (NCI)Hs.54925
Alternative Splicing GalleryENSG00000225614
Gene ExpressionZNF469 [ NCBI-GEO ]   ZNF469 [ EBI - ARRAY_EXPRESS ]   ZNF469 [ SEEK ]   ZNF469 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF469 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84627
GTEX Portal (Tissue expression)ZNF469
Human Protein AtlasENSG00000225614-ZNF469 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JG9
Splice isoforms : SwissVarQ96JG9
PhosPhoSitePlusQ96JG9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF469
DMDM Disease mutations84627
Blocks (Seattle)ZNF469
SuperfamilyQ96JG9
Human Protein Atlas [tissue]ENSG00000225614-ZNF469 [tissue]
Peptide AtlasQ96JG9
IPIIPI00644680   
Protein Interaction databases
DIP (DOE-UCLA)Q96JG9
IntAct (EBI)Q96JG9
FunCoupENSG00000225614
BioGRIDZNF469
STRING (EMBL)ZNF469
ZODIACZNF469
Ontologies - Pathways
QuickGOQ96JG9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF469
Atlas of Cancer Signalling NetworkZNF469
Wikipedia pathwaysZNF469
Orthology - Evolution
OrthoDB84627
GeneTree (enSembl)ENSG00000225614
Phylogenetic Trees/Animal Genes : TreeFamZNF469
HOVERGENQ96JG9
HOGENOMQ96JG9
Homologs : HomoloGeneZNF469
Homology/Alignments : Family Browser (UCSC)ZNF469
Gene fusions - Rearrangements
Tumor Fusion PortalZNF469
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF469 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF469
dbVarZNF469
ClinVarZNF469
1000_GenomesZNF469 
Exome Variant ServerZNF469
ExAC (Exome Aggregation Consortium)ENSG00000225614
GNOMAD BrowserENSG00000225614
Genetic variants : HAPMAP84627
Genomic Variants (DGV)ZNF469 [DGVbeta]
DECIPHERZNF469 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF469 
Mutations
ICGC Data PortalZNF469 
TCGA Data PortalZNF469 
Broad Tumor PortalZNF469
OASIS PortalZNF469 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF469  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF469
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF469
DgiDB (Drug Gene Interaction Database)ZNF469
DoCM (Curated mutations)ZNF469 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF469 (select a term)
intoGenZNF469
Cancer3DZNF469(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM229200    612078   
Orphanet12028   
DisGeNETZNF469
MedgenZNF469
Genetic Testing Registry ZNF469
NextProtQ96JG9 [Medical]
TSGene84627
GENETestsZNF469
Target ValidationZNF469
Huge Navigator ZNF469 [HugePedia]
snp3D : Map Gene to Disease84627
BioCentury BCIQZNF469
ClinGenZNF469
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84627
Chemical/Pharm GKB GenePA134861470
Clinical trialZNF469
Miscellaneous
canSAR (ICR)ZNF469 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF469
EVEXZNF469
GoPubMedZNF469
iHOPZNF469
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:44 CET 2017

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