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ZNF473 (zinc finger protein 473)

Identity

Alias_symbol (synonym)KIAA1141
DKFZP434N043
HZFP100
Other aliasZFP100
ZN473
HGNC (Hugo) ZNF473
LocusID (NCBI) 25888
Atlas_Id 76175
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50025893 and ends at 50048774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPS15L1 (19p13.11) / ZNF473 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF473   23239
Cards
Entrez_Gene (NCBI)ZNF473  25888  zinc finger protein 473
AliasesZFP100; ZN473
GeneCards (Weizmann)ZNF473
Ensembl hg19 (Hinxton)ENSG00000142528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142528 [Gene_View]  chr19:50025893-50048774 [Contig_View]  ZNF473 [Vega]
ICGC DataPortalENSG00000142528
TCGA cBioPortalZNF473
AceView (NCBI)ZNF473
Genatlas (Paris)ZNF473
WikiGenes25888
SOURCE (Princeton)ZNF473
Genetics Home Reference (NIH)ZNF473
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF473  -     chr19:50025893-50048774 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF473  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblZNF473 - 19q13.33 [CytoView hg19]  ZNF473 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIZNF473 [Mapview hg19]  ZNF473 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032967 AF454744 AK054671 AK292452 AK302293
RefSeq transcript (Entrez)NM_001006656 NM_001308424 NM_015428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF473
Cluster EST : UnigeneHs.440553 [ NCBI ]
CGAP (NCI)Hs.440553
Alternative Splicing GalleryENSG00000142528
Gene ExpressionZNF473 [ NCBI-GEO ]   ZNF473 [ EBI - ARRAY_EXPRESS ]   ZNF473 [ SEEK ]   ZNF473 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF473 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25888
GTEX Portal (Tissue expression)ZNF473
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTR7
Splice isoforms : SwissVarQ8WTR7
PhosPhoSitePlusQ8WTR7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF473
DMDM Disease mutations25888
Blocks (Seattle)ZNF473
PDB (SRS)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
PDB (PDBSum)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
PDB (IMB)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
PDB (RSDB)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
Structural Biology KnowledgeBase2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
SCOP (Structural Classification of Proteins)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
CATH (Classification of proteins structures)2EMB    2EMC    2EME    2EOU    2EOX    2EOY    2EOZ    2YRH    2YRJ    2YSV    2YTD    2YTE    2YTT    2YU5   
SuperfamilyQ8WTR7
Human Protein AtlasENSG00000142528
Peptide AtlasQ8WTR7
HPRD11721
IPIIPI00297388   IPI00942395   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTR7
IntAct (EBI)Q8WTR7
FunCoupENSG00000142528
BioGRIDZNF473
STRING (EMBL)ZNF473
ZODIACZNF473
Ontologies - Pathways
QuickGOQ8WTR7
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  histone mRNA metabolic process  Cajal body  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleoplasm  regulation of transcription, DNA-templated  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  histone mRNA metabolic process  Cajal body  metal ion binding  
NDEx NetworkZNF473
Atlas of Cancer Signalling NetworkZNF473
Wikipedia pathwaysZNF473
Orthology - Evolution
OrthoDB25888
GeneTree (enSembl)ENSG00000142528
Phylogenetic Trees/Animal Genes : TreeFamZNF473
HOVERGENQ8WTR7
HOGENOMQ8WTR7
Homologs : HomoloGeneZNF473
Homology/Alignments : Family Browser (UCSC)ZNF473
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF473 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF473
dbVarZNF473
ClinVarZNF473
1000_GenomesZNF473 
Exome Variant ServerZNF473
ExAC (Exome Aggregation Consortium)ZNF473 (select the gene name)
Genetic variants : HAPMAP25888
Genomic Variants (DGV)ZNF473 [DGVbeta]
DECIPHERZNF473 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF473 
Mutations
ICGC Data PortalZNF473 
TCGA Data PortalZNF473 
Broad Tumor PortalZNF473
OASIS PortalZNF473 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF473  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF473
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF473
DgiDB (Drug Gene Interaction Database)ZNF473
DoCM (Curated mutations)ZNF473 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF473 (select a term)
intoGenZNF473
Cancer3DZNF473(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF473
Genetic Testing Registry ZNF473
NextProtQ8WTR7 [Medical]
TSGene25888
GENETestsZNF473
Target ValidationZNF473
Huge Navigator ZNF473 [HugePedia]
snp3D : Map Gene to Disease25888
BioCentury BCIQZNF473
ClinGenZNF473
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25888
Chemical/Pharm GKB GenePA134987987
Clinical trialZNF473
Miscellaneous
canSAR (ICR)ZNF473 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF473
EVEXZNF473
GoPubMedZNF473
iHOPZNF473
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:31 CEST 2017

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