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ZNF474 (zinc finger protein 474)

Identity

Alias_symbol (synonym)4933409D10Rik
FLJ32921
Other alias-
HGNC (Hugo) ZNF474
LocusID (NCBI) 133923
Atlas_Id 76176
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 121465208 and ends at 121489266 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF474 (5q23.2) / VPS13D (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF474   23245
Cards
Entrez_Gene (NCBI)ZNF474  133923  zinc finger protein 474
Aliases
GeneCards (Weizmann)ZNF474
Ensembl hg19 (Hinxton)ENSG00000164185 [Gene_View]  chr5:121465208-121489266 [Contig_View]  ZNF474 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164185 [Gene_View]  chr5:121465208-121489266 [Contig_View]  ZNF474 [Vega]
ICGC DataPortalENSG00000164185
TCGA cBioPortalZNF474
AceView (NCBI)ZNF474
Genatlas (Paris)ZNF474
WikiGenes133923
SOURCE (Princeton)ZNF474
Genetics Home Reference (NIH)ZNF474
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF474  -     chr5:121465208-121489266 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF474  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblZNF474 - 5q23.2 [CytoView hg19]  ZNF474 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIZNF474 [Mapview hg19]  ZNF474 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057483 AK290985 AY461732 BC133022 BC133026
RefSeq transcript (Entrez)NM_207317
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)ZNF474
Cluster EST : UnigeneHs.729673 [ NCBI ]
CGAP (NCI)Hs.729673
Alternative Splicing GalleryENSG00000164185
Gene ExpressionZNF474 [ NCBI-GEO ]   ZNF474 [ EBI - ARRAY_EXPRESS ]   ZNF474 [ SEEK ]   ZNF474 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF474 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133923
GTEX Portal (Tissue expression)ZNF474
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6S9Z5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6S9Z5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6S9Z5
Splice isoforms : SwissVarQ6S9Z5
PhosPhoSitePlusQ6S9Z5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)ZC2HC1    Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF474
DMDM Disease mutations133923
Blocks (Seattle)ZNF474
SuperfamilyQ6S9Z5
Human Protein AtlasENSG00000164185
Peptide AtlasQ6S9Z5
HPRD13411
IPIIPI00307352   IPI00964127   IPI00963854   
Protein Interaction databases
DIP (DOE-UCLA)Q6S9Z5
IntAct (EBI)Q6S9Z5
FunCoupENSG00000164185
BioGRIDZNF474
STRING (EMBL)ZNF474
ZODIACZNF474
Ontologies - Pathways
QuickGOQ6S9Z5
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkZNF474
Atlas of Cancer Signalling NetworkZNF474
Wikipedia pathwaysZNF474
Orthology - Evolution
OrthoDB133923
GeneTree (enSembl)ENSG00000164185
Phylogenetic Trees/Animal Genes : TreeFamZNF474
HOVERGENQ6S9Z5
HOGENOMQ6S9Z5
Homologs : HomoloGeneZNF474
Homology/Alignments : Family Browser (UCSC)ZNF474
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF474 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF474
dbVarZNF474
ClinVarZNF474
1000_GenomesZNF474 
Exome Variant ServerZNF474
ExAC (Exome Aggregation Consortium)ZNF474 (select the gene name)
Genetic variants : HAPMAP133923
Genomic Variants (DGV)ZNF474 [DGVbeta]
DECIPHER (Syndromes)5:121465208-121489266  ENSG00000164185
CONAN: Copy Number AnalysisZNF474 
Mutations
ICGC Data PortalZNF474 
TCGA Data PortalZNF474 
Broad Tumor PortalZNF474
OASIS PortalZNF474 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF474  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF474
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF474
DgiDB (Drug Gene Interaction Database)ZNF474
DoCM (Curated mutations)ZNF474 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF474 (select a term)
intoGenZNF474
Cancer3DZNF474(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF474
Genetic Testing Registry ZNF474
NextProtQ6S9Z5 [Medical]
TSGene133923
GENETestsZNF474
Huge Navigator ZNF474 [HugePedia]
snp3D : Map Gene to Disease133923
BioCentury BCIQZNF474
ClinGenZNF474
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133923
Chemical/Pharm GKB GenePA144596519
Clinical trialZNF474
Miscellaneous
canSAR (ICR)ZNF474 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF474
EVEXZNF474
GoPubMedZNF474
iHOPZNF474
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:07 CET 2017

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