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ZNF479 (zinc finger protein 479)

Identity

Alias_symbol (synonym)KR19
Other aliasHKr19
HGNC (Hugo) ZNF479
LocusID (NCBI) 90827
Atlas_Id 76177
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 57119619 and ends at 57139864 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RIN2 (20p11.23) / ZNF479 (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF479   23258
Cards
Entrez_Gene (NCBI)ZNF479  90827  zinc finger protein 479
AliasesHKr19; KR19
GeneCards (Weizmann)ZNF479
Ensembl hg19 (Hinxton)ENSG00000185177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185177 [Gene_View]  chr7:57119619-57139864 [Contig_View]  ZNF479 [Vega]
ICGC DataPortalENSG00000185177
TCGA cBioPortalZNF479
AceView (NCBI)ZNF479
Genatlas (Paris)ZNF479
WikiGenes90827
SOURCE (Princeton)ZNF479
Genetics Home Reference (NIH)ZNF479
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF479  -     chr7:57119619-57139864 -  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF479  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF479 - 7p11.2 [CytoView hg19]  ZNF479 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF479 [Mapview hg19]  ZNF479 [Mapview hg38]
OMIM617444   
Gene and transcription
Genbank (Entrez)AF277624 BC167802
RefSeq transcript (Entrez)NM_033273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF479
Cluster EST : UnigeneHs.616660 [ NCBI ]
CGAP (NCI)Hs.616660
Alternative Splicing GalleryENSG00000185177
Gene ExpressionZNF479 [ NCBI-GEO ]   ZNF479 [ EBI - ARRAY_EXPRESS ]   ZNF479 [ SEEK ]   ZNF479 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF479 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90827
GTEX Portal (Tissue expression)ZNF479
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JC4
Splice isoforms : SwissVarQ96JC4
PhosPhoSitePlusQ96JC4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF479
DMDM Disease mutations90827
Blocks (Seattle)ZNF479
SuperfamilyQ96JC4
Human Protein AtlasENSG00000185177
Peptide AtlasQ96JC4
IPIIPI00064064   
Protein Interaction databases
DIP (DOE-UCLA)Q96JC4
IntAct (EBI)Q96JC4
FunCoupENSG00000185177
BioGRIDZNF479
STRING (EMBL)ZNF479
ZODIACZNF479
Ontologies - Pathways
QuickGOQ96JC4
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF479
Atlas of Cancer Signalling NetworkZNF479
Wikipedia pathwaysZNF479
Orthology - Evolution
OrthoDB90827
GeneTree (enSembl)ENSG00000185177
Phylogenetic Trees/Animal Genes : TreeFamZNF479
HOVERGENQ96JC4
HOGENOMQ96JC4
Homologs : HomoloGeneZNF479
Homology/Alignments : Family Browser (UCSC)ZNF479
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF479 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF479
dbVarZNF479
ClinVarZNF479
1000_GenomesZNF479 
Exome Variant ServerZNF479
ExAC (Exome Aggregation Consortium)ZNF479 (select the gene name)
Genetic variants : HAPMAP90827
Genomic Variants (DGV)ZNF479 [DGVbeta]
DECIPHERZNF479 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF479 
Mutations
ICGC Data PortalZNF479 
TCGA Data PortalZNF479 
Broad Tumor PortalZNF479
OASIS PortalZNF479 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF479  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF479
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF479
DgiDB (Drug Gene Interaction Database)ZNF479
DoCM (Curated mutations)ZNF479 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF479 (select a term)
intoGenZNF479
Cancer3DZNF479(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617444   
Orphanet
MedgenZNF479
Genetic Testing Registry ZNF479
NextProtQ96JC4 [Medical]
TSGene90827
GENETestsZNF479
Target ValidationZNF479
Huge Navigator ZNF479 [HugePedia]
snp3D : Map Gene to Disease90827
BioCentury BCIQZNF479
ClinGenZNF479
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90827
Chemical/Pharm GKB GenePA134903704
Clinical trialZNF479
Miscellaneous
canSAR (ICR)ZNF479 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF479
EVEXZNF479
GoPubMedZNF479
iHOPZNF479
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:48 CEST 2017

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