Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF48 (zinc finger protein 48)

Identity

Alias_namesZNF553
zinc finger protein 553
Alias_symbol (synonym)DKFZp762K013
FLJ31751
MGC43952
Other alias
HGNC (Hugo) ZNF48
LocusID (NCBI) 197407
Atlas_Id 76178
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30378312 and ends at 30400108 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF48   13114
Cards
Entrez_Gene (NCBI)ZNF48  197407  zinc finger protein 48
AliasesZNF553
GeneCards (Weizmann)ZNF48
Ensembl hg19 (Hinxton)ENSG00000180035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180035 [Gene_View]  chr16:30378312-30400108 [Contig_View]  ZNF48 [Vega]
ICGC DataPortalENSG00000180035
TCGA cBioPortalZNF48
AceView (NCBI)ZNF48
Genatlas (Paris)ZNF48
WikiGenes197407
SOURCE (Princeton)ZNF48
Genetics Home Reference (NIH)ZNF48
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF48  -     chr16:30378312-30400108 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF48  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF48 - 16p11.2 [CytoView hg19]  ZNF48 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF48 [Mapview hg19]  ZNF48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056313 AK122598 AL832433 BC007393 BC041388
RefSeq transcript (Entrez)NM_001214906 NM_001214907 NM_001214909 NM_001324494 NM_152652
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF48
Cluster EST : UnigeneHs.690989 [ NCBI ]
CGAP (NCI)Hs.690989
Alternative Splicing GalleryENSG00000180035
Gene ExpressionZNF48 [ NCBI-GEO ]   ZNF48 [ EBI - ARRAY_EXPRESS ]   ZNF48 [ SEEK ]   ZNF48 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197407
GTEX Portal (Tissue expression)ZNF48
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MX3
Splice isoforms : SwissVarQ96MX3
PhosPhoSitePlusQ96MX3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF48
DMDM Disease mutations197407
Blocks (Seattle)ZNF48
SuperfamilyQ96MX3
Human Protein AtlasENSG00000180035
Peptide AtlasQ96MX3
HPRD15836
IPIIPI00043494   IPI00945026   IPI00982123   IPI00982763   
Protein Interaction databases
DIP (DOE-UCLA)Q96MX3
IntAct (EBI)Q96MX3
FunCoupENSG00000180035
BioGRIDZNF48
STRING (EMBL)ZNF48
ZODIACZNF48
Ontologies - Pathways
QuickGOQ96MX3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF48
Atlas of Cancer Signalling NetworkZNF48
Wikipedia pathwaysZNF48
Orthology - Evolution
OrthoDB197407
GeneTree (enSembl)ENSG00000180035
Phylogenetic Trees/Animal Genes : TreeFamZNF48
HOVERGENQ96MX3
HOGENOMQ96MX3
Homologs : HomoloGeneZNF48
Homology/Alignments : Family Browser (UCSC)ZNF48
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF48
dbVarZNF48
ClinVarZNF48
1000_GenomesZNF48 
Exome Variant ServerZNF48
ExAC (Exome Aggregation Consortium)ZNF48 (select the gene name)
Genetic variants : HAPMAP197407
Genomic Variants (DGV)ZNF48 [DGVbeta]
DECIPHERZNF48 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF48 
Mutations
ICGC Data PortalZNF48 
TCGA Data PortalZNF48 
Broad Tumor PortalZNF48
OASIS PortalZNF48 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF48  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF48
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF48
DgiDB (Drug Gene Interaction Database)ZNF48
DoCM (Curated mutations)ZNF48 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF48 (select a term)
intoGenZNF48
Cancer3DZNF48(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF48
Genetic Testing Registry ZNF48
NextProtQ96MX3 [Medical]
TSGene197407
GENETestsZNF48
Huge Navigator ZNF48 [HugePedia]
snp3D : Map Gene to Disease197407
BioCentury BCIQZNF48
ClinGenZNF48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197407
Chemical/Pharm GKB GenePA37689
Clinical trialZNF48
Miscellaneous
canSAR (ICR)ZNF48 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF48
EVEXZNF48
GoPubMedZNF48
iHOPZNF48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:03:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.