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ZNF480 (zinc finger protein 480)

Identity

Alias_symbol (synonym)MGC32104
Other alias-
HGNC (Hugo) ZNF480
LocusID (NCBI) 147657
Atlas_Id 76179
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52297169 and ends at 52325927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF480 (19q13.41) / EIF2S3 (Xp22.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF480   23305
Cards
Entrez_Gene (NCBI)ZNF480  147657  zinc finger protein 480
Aliases
GeneCards (Weizmann)ZNF480
Ensembl hg19 (Hinxton)ENSG00000198464 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198464 [Gene_View]  chr19:52297169-52325927 [Contig_View]  ZNF480 [Vega]
ICGC DataPortalENSG00000198464
TCGA cBioPortalZNF480
AceView (NCBI)ZNF480
Genatlas (Paris)ZNF480
WikiGenes147657
SOURCE (Princeton)ZNF480
Genetics Home Reference (NIH)ZNF480
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF480  -     chr19:52297169-52325927 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF480  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF480 - 19q13.41 [CytoView hg19]  ZNF480 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF480 [Mapview hg19]  ZNF480 [Mapview hg38]
OMIM613910   
Gene and transcription
Genbank (Entrez)AK096442 AK096559 AK303271 AL832560 AY512662
RefSeq transcript (Entrez)NM_001297624 NM_001297625 NM_144684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF480
Cluster EST : UnigeneHs.729317 [ NCBI ]
CGAP (NCI)Hs.729317
Alternative Splicing GalleryENSG00000198464
Gene ExpressionZNF480 [ NCBI-GEO ]   ZNF480 [ EBI - ARRAY_EXPRESS ]   ZNF480 [ SEEK ]   ZNF480 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF480 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147657
GTEX Portal (Tissue expression)ZNF480
Human Protein AtlasENSG00000198464-ZNF480 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV37
Splice isoforms : SwissVarQ8WV37
PhosPhoSitePlusQ8WV37
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF480
DMDM Disease mutations147657
Blocks (Seattle)ZNF480
SuperfamilyQ8WV37
Human Protein Atlas [tissue]ENSG00000198464-ZNF480 [tissue]
Peptide AtlasQ8WV37
HPRD15799
IPIIPI00940728   IPI00480120   IPI00549366   IPI00884395   IPI00945281   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV37
IntAct (EBI)Q8WV37
FunCoupENSG00000198464
BioGRIDZNF480
STRING (EMBL)ZNF480
ZODIACZNF480
Ontologies - Pathways
QuickGOQ8WV37
Ontology : AmiGOnucleic acid binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF480
Atlas of Cancer Signalling NetworkZNF480
Wikipedia pathwaysZNF480
Orthology - Evolution
OrthoDB147657
GeneTree (enSembl)ENSG00000198464
Phylogenetic Trees/Animal Genes : TreeFamZNF480
HOVERGENQ8WV37
HOGENOMQ8WV37
Homologs : HomoloGeneZNF480
Homology/Alignments : Family Browser (UCSC)ZNF480
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF480
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF480 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF480
dbVarZNF480
ClinVarZNF480
1000_GenomesZNF480 
Exome Variant ServerZNF480
ExAC (Exome Aggregation Consortium)ENSG00000198464
GNOMAD BrowserENSG00000198464
Genetic variants : HAPMAP147657
Genomic Variants (DGV)ZNF480 [DGVbeta]
DECIPHERZNF480 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF480 
Mutations
ICGC Data PortalZNF480 
TCGA Data PortalZNF480 
Broad Tumor PortalZNF480
OASIS PortalZNF480 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF480  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF480
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF480
DgiDB (Drug Gene Interaction Database)ZNF480
DoCM (Curated mutations)ZNF480 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF480 (select a term)
intoGenZNF480
Cancer3DZNF480(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613910   
Orphanet
MedgenZNF480
Genetic Testing Registry ZNF480
NextProtQ8WV37 [Medical]
TSGene147657
GENETestsZNF480
Target ValidationZNF480
Huge Navigator ZNF480 [HugePedia]
snp3D : Map Gene to Disease147657
BioCentury BCIQZNF480
ClinGenZNF480
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147657
Chemical/Pharm GKB GenePA134876563
Clinical trialZNF480
Miscellaneous
canSAR (ICR)ZNF480 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF480
EVEXZNF480
GoPubMedZNF480
iHOPZNF480
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:12 CET 2017

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