Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF483 (zinc finger protein 483)

Identity

Alias_symbol (synonym)ZKSCAN16
KIAA1962
ZSCAN48
Other alias
HGNC (Hugo) ZNF483
LocusID (NCBI) 158399
Atlas_Id 53669
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 114287439 and ends at 114340124 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF483 (9q31.3) / DHFR (5q14.1)ZNF483 (9q31.3) / GAPVD1 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF483   23384
Cards
Entrez_Gene (NCBI)ZNF483  158399  zinc finger protein 483
AliasesZKSCAN16; ZSCAN48
GeneCards (Weizmann)ZNF483
Ensembl hg19 (Hinxton)ENSG00000173258 [Gene_View]  chr9:114287439-114340124 [Contig_View]  ZNF483 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173258 [Gene_View]  chr9:114287439-114340124 [Contig_View]  ZNF483 [Vega]
ICGC DataPortalENSG00000173258
TCGA cBioPortalZNF483
AceView (NCBI)ZNF483
Genatlas (Paris)ZNF483
WikiGenes158399
SOURCE (Princeton)ZNF483
Genetics Home Reference (NIH)ZNF483
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF483  -     chr9:114287439-114340124 +  9q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF483  -     9q31.3   [Description]    (hg38-Dec_2013)
EnsemblZNF483 - 9q31.3 [CytoView hg19]  ZNF483 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIZNF483 [Mapview hg19]  ZNF483 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075842 AK054857 AK092811 AK291267 BC020893
RefSeq transcript (Entrez)NM_001007169 NM_133464
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ZNF483
Cluster EST : UnigeneHs.660784 [ NCBI ]
CGAP (NCI)Hs.660784
Alternative Splicing GalleryENSG00000173258
Gene ExpressionZNF483 [ NCBI-GEO ]   ZNF483 [ EBI - ARRAY_EXPRESS ]   ZNF483 [ SEEK ]   ZNF483 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF483 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158399
GTEX Portal (Tissue expression)ZNF483
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF39
Splice isoforms : SwissVarQ8TF39
PhosPhoSitePlusQ8TF39
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF483
DMDM Disease mutations158399
Blocks (Seattle)ZNF483
PDB (SRS)2CTU   
PDB (PDBSum)2CTU   
PDB (IMB)2CTU   
PDB (RSDB)2CTU   
Structural Biology KnowledgeBase2CTU   
SCOP (Structural Classification of Proteins)2CTU   
CATH (Classification of proteins structures)2CTU   
SuperfamilyQ8TF39
Human Protein AtlasENSG00000173258
Peptide AtlasQ8TF39
HPRD18345
IPIIPI00235842   IPI01010334   IPI00477250   IPI00478644   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF39
IntAct (EBI)Q8TF39
FunCoupENSG00000173258
BioGRIDZNF483
STRING (EMBL)ZNF483
ZODIACZNF483
Ontologies - Pathways
QuickGOQ8TF39
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF483
Atlas of Cancer Signalling NetworkZNF483
Wikipedia pathwaysZNF483
Orthology - Evolution
OrthoDB158399
GeneTree (enSembl)ENSG00000173258
Phylogenetic Trees/Animal Genes : TreeFamZNF483
HOVERGENQ8TF39
HOGENOMQ8TF39
Homologs : HomoloGeneZNF483
Homology/Alignments : Family Browser (UCSC)ZNF483
Gene fusions - Rearrangements
Fusion : MitelmanZNF483/GAPVD1 [9q31.3/9q33.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF483 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF483
dbVarZNF483
ClinVarZNF483
1000_GenomesZNF483 
Exome Variant ServerZNF483
ExAC (Exome Aggregation Consortium)ZNF483 (select the gene name)
Genetic variants : HAPMAP158399
Genomic Variants (DGV)ZNF483 [DGVbeta]
DECIPHER (Syndromes)9:114287439-114340124  ENSG00000173258
CONAN: Copy Number AnalysisZNF483 
Mutations
ICGC Data PortalZNF483 
TCGA Data PortalZNF483 
Broad Tumor PortalZNF483
OASIS PortalZNF483 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF483  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF483
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF483
DgiDB (Drug Gene Interaction Database)ZNF483
DoCM (Curated mutations)ZNF483 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF483 (select a term)
intoGenZNF483
Cancer3DZNF483(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF483
Genetic Testing Registry ZNF483
NextProtQ8TF39 [Medical]
TSGene158399
GENETestsZNF483
Huge Navigator ZNF483 [HugePedia]
snp3D : Map Gene to Disease158399
BioCentury BCIQZNF483
ClinGenZNF483
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158399
Chemical/Pharm GKB GenePA134897404
Clinical trialZNF483
Miscellaneous
canSAR (ICR)ZNF483 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF483
EVEXZNF483
GoPubMedZNF483
iHOPZNF483
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:35:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.