Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF484 (zinc finger protein 484)

Identity

Alias_symbol (synonym)BA526D8.4
FLJ33884
Other alias
HGNC (Hugo) ZNF484
LocusID (NCBI) 83744
Atlas_Id 76180
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92845031 and ends at 92878038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF484   23385
Cards
Entrez_Gene (NCBI)ZNF484  83744  zinc finger protein 484
AliasesBA526D8.4
GeneCards (Weizmann)ZNF484
Ensembl hg19 (Hinxton)ENSG00000127081 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127081 [Gene_View]  chr9:92845031-92878038 [Contig_View]  ZNF484 [Vega]
ICGC DataPortalENSG00000127081
TCGA cBioPortalZNF484
AceView (NCBI)ZNF484
Genatlas (Paris)ZNF484
WikiGenes83744
SOURCE (Princeton)ZNF484
Genetics Home Reference (NIH)ZNF484
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF484  -     chr9:92845031-92878038 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF484  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblZNF484 - 9q22.31 [CytoView hg19]  ZNF484 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIZNF484 [Mapview hg19]  ZNF484 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000772 AK091203 AK292997 AK299274 AK309617
RefSeq transcript (Entrez)NM_001007101 NM_001261458 NM_001261459 NM_001261460 NM_031486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF484
Cluster EST : UnigeneHs.668378 [ NCBI ]
CGAP (NCI)Hs.668378
Alternative Splicing GalleryENSG00000127081
Gene ExpressionZNF484 [ NCBI-GEO ]   ZNF484 [ EBI - ARRAY_EXPRESS ]   ZNF484 [ SEEK ]   ZNF484 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF484 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83744
GTEX Portal (Tissue expression)ZNF484
Human Protein AtlasENSG00000127081-ZNF484 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JVG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JVG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JVG2
Splice isoforms : SwissVarQ5JVG2
PhosPhoSitePlusQ5JVG2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF484
DMDM Disease mutations83744
Blocks (Seattle)ZNF484
PDB (SRS)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
PDB (PDBSum)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
PDB (IMB)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
PDB (RSDB)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
Structural Biology KnowledgeBase2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
SCOP (Structural Classification of Proteins)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
CATH (Classification of proteins structures)2EMF    2EMG    2EMH    2EMI    2EOV    2EP1    2EP2    2EP3    2EQW    2YTJ    2YTO    2YTP    2YTS   
SuperfamilyQ5JVG2
Human Protein Atlas [tissue]ENSG00000127081-ZNF484 [tissue]
Peptide AtlasQ5JVG2
HPRD18346
IPIIPI00873888   IPI00184544   IPI00477021   
Protein Interaction databases
DIP (DOE-UCLA)Q5JVG2
IntAct (EBI)Q5JVG2
FunCoupENSG00000127081
BioGRIDZNF484
STRING (EMBL)ZNF484
ZODIACZNF484
Ontologies - Pathways
QuickGOQ5JVG2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF484
Atlas of Cancer Signalling NetworkZNF484
Wikipedia pathwaysZNF484
Orthology - Evolution
OrthoDB83744
GeneTree (enSembl)ENSG00000127081
Phylogenetic Trees/Animal Genes : TreeFamZNF484
HOVERGENQ5JVG2
HOGENOMQ5JVG2
Homologs : HomoloGeneZNF484
Homology/Alignments : Family Browser (UCSC)ZNF484
Gene fusions - Rearrangements
Tumor Fusion PortalZNF484
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF484 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF484
dbVarZNF484
ClinVarZNF484
1000_GenomesZNF484 
Exome Variant ServerZNF484
ExAC (Exome Aggregation Consortium)ENSG00000127081
GNOMAD BrowserENSG00000127081
Genetic variants : HAPMAP83744
Genomic Variants (DGV)ZNF484 [DGVbeta]
DECIPHERZNF484 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF484 
Mutations
ICGC Data PortalZNF484 
TCGA Data PortalZNF484 
Broad Tumor PortalZNF484
OASIS PortalZNF484 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF484  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF484
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF484
DgiDB (Drug Gene Interaction Database)ZNF484
DoCM (Curated mutations)ZNF484 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF484 (select a term)
intoGenZNF484
Cancer3DZNF484(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF484
MedgenZNF484
Genetic Testing Registry ZNF484
NextProtQ5JVG2 [Medical]
TSGene83744
GENETestsZNF484
Target ValidationZNF484
Huge Navigator ZNF484 [HugePedia]
snp3D : Map Gene to Disease83744
BioCentury BCIQZNF484
ClinGenZNF484
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83744
Chemical/Pharm GKB GenePA134992184
Clinical trialZNF484
Miscellaneous
canSAR (ICR)ZNF484 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF484
EVEXZNF484
GoPubMedZNF484
iHOPZNF484
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:00 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.