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ZNF485 (zinc finger protein 485)

Identity

Other alias-
HGNC (Hugo) ZNF485
LocusID (NCBI) 220992
Atlas_Id 76181
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43606407 and ends at 43617904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF485 (10q11.21) / ZNF32-AS2 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF485   23440
Cards
Entrez_Gene (NCBI)ZNF485  220992  zinc finger protein 485
Aliases
GeneCards (Weizmann)ZNF485
Ensembl hg19 (Hinxton)ENSG00000198298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198298 [Gene_View]  chr10:43606407-43617904 [Contig_View]  ZNF485 [Vega]
ICGC DataPortalENSG00000198298
TCGA cBioPortalZNF485
AceView (NCBI)ZNF485
Genatlas (Paris)ZNF485
WikiGenes220992
SOURCE (Princeton)ZNF485
Genetics Home Reference (NIH)ZNF485
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF485  -     chr10:43606407-43617904 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF485  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF485 - 10q11.21 [CytoView hg19]  ZNF485 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF485 [Mapview hg19]  ZNF485 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074679 AK299707 AK313328 BC014161 BX648149
RefSeq transcript (Entrez)NM_001318140 NM_001318141 NM_001318142 NM_001318143 NM_145312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF485
Cluster EST : UnigeneHs.147440 [ NCBI ]
CGAP (NCI)Hs.147440
Alternative Splicing GalleryENSG00000198298
Gene ExpressionZNF485 [ NCBI-GEO ]   ZNF485 [ EBI - ARRAY_EXPRESS ]   ZNF485 [ SEEK ]   ZNF485 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF485 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220992
GTEX Portal (Tissue expression)ZNF485
Human Protein AtlasENSG00000198298-ZNF485 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCK3
Splice isoforms : SwissVarQ8NCK3
PhosPhoSitePlusQ8NCK3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF485
DMDM Disease mutations220992
Blocks (Seattle)ZNF485
SuperfamilyQ8NCK3
Human Protein Atlas [tissue]ENSG00000198298-ZNF485 [tissue]
Peptide AtlasQ8NCK3
HPRD15800
IPIIPI00412024   IPI00796662   IPI00926859   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCK3
IntAct (EBI)Q8NCK3
FunCoupENSG00000198298
BioGRIDZNF485
STRING (EMBL)ZNF485
ZODIACZNF485
Ontologies - Pathways
QuickGOQ8NCK3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF485
Atlas of Cancer Signalling NetworkZNF485
Wikipedia pathwaysZNF485
Orthology - Evolution
OrthoDB220992
GeneTree (enSembl)ENSG00000198298
Phylogenetic Trees/Animal Genes : TreeFamZNF485
HOVERGENQ8NCK3
HOGENOMQ8NCK3
Homologs : HomoloGeneZNF485
Homology/Alignments : Family Browser (UCSC)ZNF485
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF485
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF485 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF485
dbVarZNF485
ClinVarZNF485
1000_GenomesZNF485 
Exome Variant ServerZNF485
ExAC (Exome Aggregation Consortium)ENSG00000198298
GNOMAD BrowserENSG00000198298
Genetic variants : HAPMAP220992
Genomic Variants (DGV)ZNF485 [DGVbeta]
DECIPHERZNF485 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF485 
Mutations
ICGC Data PortalZNF485 
TCGA Data PortalZNF485 
Broad Tumor PortalZNF485
OASIS PortalZNF485 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF485  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF485
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF485
DgiDB (Drug Gene Interaction Database)ZNF485
DoCM (Curated mutations)ZNF485 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF485 (select a term)
intoGenZNF485
Cancer3DZNF485(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF485
Genetic Testing Registry ZNF485
NextProtQ8NCK3 [Medical]
TSGene220992
GENETestsZNF485
Target ValidationZNF485
Huge Navigator ZNF485 [HugePedia]
snp3D : Map Gene to Disease220992
BioCentury BCIQZNF485
ClinGenZNF485
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220992
Chemical/Pharm GKB GenePA134887005
Clinical trialZNF485
Miscellaneous
canSAR (ICR)ZNF485 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF485
EVEXZNF485
GoPubMedZNF485
iHOPZNF485
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:12 CET 2017

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