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ZNF485 (zinc finger protein 485)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF485
LocusID (NCBI) 220992
Atlas_Id 76181
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43606438 and ends at 43617904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF485 (10q11.21) / ZNF32-AS2 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF485   23440
Cards
Entrez_Gene (NCBI)ZNF485    zinc finger protein 485
Aliases
GeneCards (Weizmann)ZNF485
Ensembl hg19 (Hinxton)ENSG00000198298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198298 [Gene_View]  ENSG00000198298 [Sequence]  chr10:43606438-43617904 [Contig_View]  ZNF485 [Vega]
ICGC DataPortalENSG00000198298
TCGA cBioPortalZNF485
AceView (NCBI)ZNF485
Genatlas (Paris)ZNF485
SOURCE (Princeton)ZNF485
Genetics Home Reference (NIH)ZNF485
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF485  -     chr10:43606438-43617904 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF485  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathZNF485 - 10q11.21 [CytoView hg19]  ZNF485 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000198298
Genome Data Viewer NCBIZNF485 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK074679 AK299707 AK313328 BC014161 BX648149
RefSeq transcript (Entrez)NM_001318140 NM_001318141 NM_001318142 NM_001318143 NM_145312
Consensus coding sequences : CCDS (NCBI)ZNF485
Gene ExpressionZNF485 [ NCBI-GEO ]   ZNF485 [ EBI - ARRAY_EXPRESS ]   ZNF485 [ SEEK ]   ZNF485 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF485 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF485 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220992
GTEX Portal (Tissue expression)ZNF485
Human Protein AtlasENSG00000198298-ZNF485 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCK3
PhosPhoSitePlusQ8NCK3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF485
SuperfamilyQ8NCK3
AlphaFold pdb e-kbQ8NCK3   
Human Protein Atlas [tissue]ENSG00000198298-ZNF485 [tissue]
HPRD15800
Protein Interaction databases
DIP (DOE-UCLA)Q8NCK3
IntAct (EBI)Q8NCK3
BioGRIDZNF485
STRING (EMBL)ZNF485
ZODIACZNF485
Ontologies - Pathways
QuickGOQ8NCK3
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF485
Atlas of Cancer Signalling NetworkZNF485
Wikipedia pathwaysZNF485
Orthology - Evolution
OrthoDB220992
GeneTree (enSembl)ENSG00000198298
Phylogenetic Trees/Animal Genes : TreeFamZNF485
Homologs : HomoloGeneZNF485
Homology/Alignments : Family Browser (UCSC)ZNF485
Gene fusions - Rearrangements
Fusion : QuiverZNF485
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF485 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF485
dbVarZNF485
ClinVarZNF485
MonarchZNF485
1000_GenomesZNF485 
Exome Variant ServerZNF485
GNOMAD BrowserENSG00000198298
Varsome BrowserZNF485
ACMGZNF485 variants
VarityQ8NCK3
Genomic Variants (DGV)ZNF485 [DGVbeta]
DECIPHERZNF485 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF485 
Mutations
ICGC Data PortalZNF485 
TCGA Data PortalZNF485 
Broad Tumor PortalZNF485
OASIS PortalZNF485 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF485  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF485
Mutations and Diseases : HGMDZNF485
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF485
DgiDB (Drug Gene Interaction Database)ZNF485
DoCM (Curated mutations)ZNF485
CIViC (Clinical Interpretations of Variants in Cancer)ZNF485
Cancer3DZNF485
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF485
MedgenZNF485
Genetic Testing Registry ZNF485
NextProtQ8NCK3 [Medical]
GENETestsZNF485
Target ValidationZNF485
Huge Navigator ZNF485 [HugePedia]
ClinGenZNF485
Clinical trials, drugs, therapy
MyCancerGenomeZNF485
Protein Interactions : CTDZNF485
Pharm GKB GenePA134887005
PharosQ8NCK3
Clinical trialZNF485
Miscellaneous
canSAR (ICR)ZNF485
HarmonizomeZNF485
DataMed IndexZNF485
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF485
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:47 CEST 2021

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