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ZNF487 (zinc finger protein 487)

Identity

Alias_namesKRBO1
ZNF487P
KRAB domain only 1
zinc finger protein 487, pseudogene
Other alias
HGNC (Hugo) ZNF487
LocusID (NCBI) 642819
Atlas_Id 76183
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43437126 and ends at 43482559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF487 (10q11.21) / FXYD4 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;10)(q11;q11) ZNF487/FXYD4

External links

Nomenclature
HGNC (Hugo)ZNF487   23488
Cards
Entrez_Gene (NCBI)ZNF487  642819  zinc finger protein 487
AliasesKRBO1; ZNF487P
GeneCards (Weizmann)ZNF487
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:43437126-43482559 [Contig_View]  ZNF487 [Vega]
TCGA cBioPortalZNF487
AceView (NCBI)ZNF487
Genatlas (Paris)ZNF487
WikiGenes642819
SOURCE (Princeton)ZNF487
Genetics Home Reference (NIH)ZNF487
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF487  -     chr10:43437126-43482559 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF487  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF487 - 10q11.21 [CytoView hg19]  ZNF487 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF487 [Mapview hg19]  ZNF487 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302442
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF487
Cluster EST : UnigeneHs.719657 [ NCBI ]
CGAP (NCI)Hs.719657
Gene ExpressionZNF487 [ NCBI-GEO ]   ZNF487 [ EBI - ARRAY_EXPRESS ]   ZNF487 [ SEEK ]   ZNF487 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF487 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642819
GTEX Portal (Tissue expression)ZNF487
Protein : pattern, domain, 3D structure
UniProt/SwissProtB1APH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB1APH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB1APH4
Splice isoforms : SwissVarB1APH4
PhosPhoSitePlusB1APH4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF487
DMDM Disease mutations642819
Blocks (Seattle)ZNF487
SuperfamilyB1APH4
Peptide AtlasB1APH4
IPIIPI00888187   IPI00878370   IPI00896506   IPI00916109   IPI00915812   
Protein Interaction databases
DIP (DOE-UCLA)B1APH4
IntAct (EBI)B1APH4
BioGRIDZNF487
STRING (EMBL)ZNF487
ZODIACZNF487
Ontologies - Pathways
QuickGOB1APH4
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF487
Atlas of Cancer Signalling NetworkZNF487
Wikipedia pathwaysZNF487
Orthology - Evolution
OrthoDB642819
Phylogenetic Trees/Animal Genes : TreeFamZNF487
HOVERGENB1APH4
HOGENOMB1APH4
Homologs : HomoloGeneZNF487
Homology/Alignments : Family Browser (UCSC)ZNF487
Gene fusions - Rearrangements
Fusion : QuiverZNF487
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF487 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF487
dbVarZNF487
ClinVarZNF487
1000_GenomesZNF487 
Exome Variant ServerZNF487
Varsome BrowserZNF487
Genetic variants : HAPMAP642819
Genomic Variants (DGV)ZNF487 [DGVbeta]
DECIPHERZNF487 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF487 
Mutations
ICGC Data PortalZNF487 
TCGA Data PortalZNF487 
Broad Tumor PortalZNF487
OASIS PortalZNF487 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF487
BioMutasearch ZNF487
DgiDB (Drug Gene Interaction Database)ZNF487
DoCM (Curated mutations)ZNF487 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF487 (select a term)
intoGenZNF487
Cancer3DZNF487(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF487
MedgenZNF487
Genetic Testing Registry ZNF487
NextProtB1APH4 [Medical]
TSGene642819
GENETestsZNF487
Target ValidationZNF487
Huge Navigator ZNF487 [HugePedia]
snp3D : Map Gene to Disease642819
BioCentury BCIQZNF487
ClinGenZNF487
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642819
Chemical/Pharm GKB GenePA143485525
Clinical trialZNF487
Miscellaneous
canSAR (ICR)ZNF487 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF487
EVEXZNF487
GoPubMedZNF487
iHOPZNF487
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:39:53 CEST 2018
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