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ZNF488 (zinc finger protein 488)

Identity

Alias_symbol (synonym)FLJ32104
Other alias-
HGNC (Hugo) ZNF488
LocusID (NCBI) 118738
Atlas_Id 76184
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 48355089 and ends at 48373866 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF488   23535
Cards
Entrez_Gene (NCBI)ZNF488  118738  zinc finger protein 488
Aliases
GeneCards (Weizmann)ZNF488
Ensembl hg19 (Hinxton)ENSG00000265763 [Gene_View]  chr10:48355089-48373866 [Contig_View]  ZNF488 [Vega]
Ensembl hg38 (Hinxton)ENSG00000265763 [Gene_View]  chr10:48355089-48373866 [Contig_View]  ZNF488 [Vega]
ICGC DataPortalENSG00000265763
TCGA cBioPortalZNF488
AceView (NCBI)ZNF488
Genatlas (Paris)ZNF488
WikiGenes118738
SOURCE (Princeton)ZNF488
Genetics Home Reference (NIH)ZNF488
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF488  -     chr10:48355089-48373866 +  10q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF488  -     10q11.22   [Description]    (hg38-Dec_2013)
EnsemblZNF488 - 10q11.22 [CytoView hg19]  ZNF488 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIZNF488 [Mapview hg19]  ZNF488 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055018 AK056666 AK091097 BC026895 BC051323
RefSeq transcript (Entrez)NM_153034
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929375
Consensus coding sequences : CCDS (NCBI)ZNF488
Cluster EST : UnigeneHs.27788 [ NCBI ]
CGAP (NCI)Hs.27788
Alternative Splicing GalleryENSG00000265763
Gene ExpressionZNF488 [ NCBI-GEO ]   ZNF488 [ EBI - ARRAY_EXPRESS ]   ZNF488 [ SEEK ]   ZNF488 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF488 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118738
GTEX Portal (Tissue expression)ZNF488
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MN9
Splice isoforms : SwissVarQ96MN9
PhosPhoSitePlusQ96MN9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF488
DMDM Disease mutations118738
Blocks (Seattle)ZNF488
SuperfamilyQ96MN9
Human Protein AtlasENSG00000265763
Peptide AtlasQ96MN9
HPRD15801
IPIIPI00065557   IPI00852912   IPI00852967   IPI00853057   IPI00853108   IPI00853128   IPI00853249   
Protein Interaction databases
DIP (DOE-UCLA)Q96MN9
IntAct (EBI)Q96MN9
FunCoupENSG00000265763
BioGRIDZNF488
STRING (EMBL)ZNF488
ZODIACZNF488
Ontologies - Pathways
QuickGOQ96MN9
Ontology : AmiGOsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  oligodendrocyte development  negative regulation of transcription, DNA-templated  metal ion binding  positive regulation of oligodendrocyte differentiation  
Ontology : EGO-EBIsequence-specific DNA binding RNA polymerase II transcription factor activity  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  oligodendrocyte development  negative regulation of transcription, DNA-templated  metal ion binding  positive regulation of oligodendrocyte differentiation  
NDEx NetworkZNF488
Atlas of Cancer Signalling NetworkZNF488
Wikipedia pathwaysZNF488
Orthology - Evolution
OrthoDB118738
GeneTree (enSembl)ENSG00000265763
Phylogenetic Trees/Animal Genes : TreeFamZNF488
HOVERGENQ96MN9
HOGENOMQ96MN9
Homologs : HomoloGeneZNF488
Homology/Alignments : Family Browser (UCSC)ZNF488
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF488 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF488
dbVarZNF488
ClinVarZNF488
1000_GenomesZNF488 
Exome Variant ServerZNF488
ExAC (Exome Aggregation Consortium)ZNF488 (select the gene name)
Genetic variants : HAPMAP118738
Genomic Variants (DGV)ZNF488 [DGVbeta]
DECIPHER (Syndromes)10:48355089-48373866  ENSG00000265763
CONAN: Copy Number AnalysisZNF488 
Mutations
ICGC Data PortalZNF488 
TCGA Data PortalZNF488 
Broad Tumor PortalZNF488
OASIS PortalZNF488 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF488  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF488
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF488
DgiDB (Drug Gene Interaction Database)ZNF488
DoCM (Curated mutations)ZNF488 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF488 (select a term)
intoGenZNF488
Cancer3DZNF488(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF488
Genetic Testing Registry ZNF488
NextProtQ96MN9 [Medical]
TSGene118738
GENETestsZNF488
Huge Navigator ZNF488 [HugePedia]
snp3D : Map Gene to Disease118738
BioCentury BCIQZNF488
ClinGenZNF488
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118738
Chemical/Pharm GKB GenePA134917840
Clinical trialZNF488
Miscellaneous
canSAR (ICR)ZNF488 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF488
EVEXZNF488
GoPubMedZNF488
iHOPZNF488
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:09 CET 2017

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