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ZNF493 (zinc finger protein 493)

Identity

Alias_symbol (synonym)FLJ36504
Other alias-
HGNC (Hugo) ZNF493
LocusID (NCBI) 284443
Atlas_Id 76186
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21397119 and ends at 21427494 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF493   23708
Cards
Entrez_Gene (NCBI)ZNF493  284443  zinc finger protein 493
Aliases
GeneCards (Weizmann)ZNF493
Ensembl hg19 (Hinxton)ENSG00000196268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196268 [Gene_View]  chr19:21397119-21427494 [Contig_View]  ZNF493 [Vega]
ICGC DataPortalENSG00000196268
TCGA cBioPortalZNF493
AceView (NCBI)ZNF493
Genatlas (Paris)ZNF493
WikiGenes284443
SOURCE (Princeton)ZNF493
Genetics Home Reference (NIH)ZNF493
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF493  -     chr19:21397119-21427494 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF493  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF493 - 19p12 [CytoView hg19]  ZNF493 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF493 [Mapview hg19]  ZNF493 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209086 AK092178 AK093823 AK095616 AK127476
RefSeq transcript (Entrez)NM_001076678 NM_145326 NM_175910
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF493
Cluster EST : UnigeneHs.656558 [ NCBI ]
CGAP (NCI)Hs.656558
Alternative Splicing GalleryENSG00000196268
Gene ExpressionZNF493 [ NCBI-GEO ]   ZNF493 [ EBI - ARRAY_EXPRESS ]   ZNF493 [ SEEK ]   ZNF493 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF493 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284443
GTEX Portal (Tissue expression)ZNF493
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZR52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZR52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZR52
Splice isoforms : SwissVarQ6ZR52
PhosPhoSitePlusQ6ZR52
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF493
DMDM Disease mutations284443
Blocks (Seattle)ZNF493
SuperfamilyQ6ZR52
Human Protein AtlasENSG00000196268
Peptide AtlasQ6ZR52
HPRD10043
IPIIPI00797583   IPI00795058   IPI00552611   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZR52
IntAct (EBI)Q6ZR52
FunCoupENSG00000196268
BioGRIDZNF493
STRING (EMBL)ZNF493
ZODIACZNF493
Ontologies - Pathways
QuickGOQ6ZR52
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF493
Atlas of Cancer Signalling NetworkZNF493
Wikipedia pathwaysZNF493
Orthology - Evolution
OrthoDB284443
GeneTree (enSembl)ENSG00000196268
Phylogenetic Trees/Animal Genes : TreeFamZNF493
HOVERGENQ6ZR52
HOGENOMQ6ZR52
Homologs : HomoloGeneZNF493
Homology/Alignments : Family Browser (UCSC)ZNF493
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF493 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF493
dbVarZNF493
ClinVarZNF493
1000_GenomesZNF493 
Exome Variant ServerZNF493
ExAC (Exome Aggregation Consortium)ZNF493 (select the gene name)
Genetic variants : HAPMAP284443
Genomic Variants (DGV)ZNF493 [DGVbeta]
DECIPHERZNF493 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF493 
Mutations
ICGC Data PortalZNF493 
TCGA Data PortalZNF493 
Broad Tumor PortalZNF493
OASIS PortalZNF493 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF493  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF493
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF493
DgiDB (Drug Gene Interaction Database)ZNF493
DoCM (Curated mutations)ZNF493 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF493 (select a term)
intoGenZNF493
Cancer3DZNF493(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF493
Genetic Testing Registry ZNF493
NextProtQ6ZR52 [Medical]
TSGene284443
GENETestsZNF493
Target ValidationZNF493
Huge Navigator ZNF493 [HugePedia]
snp3D : Map Gene to Disease284443
BioCentury BCIQZNF493
ClinGenZNF493
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284443
Chemical/Pharm GKB GenePA134932599
Clinical trialZNF493
Miscellaneous
canSAR (ICR)ZNF493 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF493
EVEXZNF493
GoPubMedZNF493
iHOPZNF493
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:33 CEST 2017

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