Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF496 (zinc finger protein 496)

Identity

Alias_symbol (synonym)ZKSCAN17
MGC15548
ZSCAN49
Other aliasNIZP1
ZFP496
HGNC (Hugo) ZNF496
LocusID (NCBI) 84838
Atlas_Id 54808
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 247297413 and ends at 247331940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF496 (1q44) / ZC2HC1B (6q24.2)ZNF496 (1q44) / ZNF496 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;6)(q44;q24) ZNF496/ZC2HC1B


External links

Nomenclature
HGNC (Hugo)ZNF496   23713
Cards
Entrez_Gene (NCBI)ZNF496  84838  zinc finger protein 496
AliasesNIZP1; ZFP496; ZKSCAN17; ZSCAN49
GeneCards (Weizmann)ZNF496
Ensembl hg19 (Hinxton)ENSG00000162714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162714 [Gene_View]  ENSG00000162714 [Sequence]  chr1:247297413-247331940 [Contig_View]  ZNF496 [Vega]
ICGC DataPortalENSG00000162714
TCGA cBioPortalZNF496
AceView (NCBI)ZNF496
Genatlas (Paris)ZNF496
WikiGenes84838
SOURCE (Princeton)ZNF496
Genetics Home Reference (NIH)ZNF496
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF496  -     chr1:247297413-247331940 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF496  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF496 - 19p12 [CytoView hg19]  ZNF496 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF496 [Mapview hg19]  ZNF496 [Mapview hg38]
OMIM613911   
Gene and transcription
Genbank (Entrez)AK024643 AK097397 AK098030 AK303258 AK310669
RefSeq transcript (Entrez)NM_001329733 NM_032752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF496
Cluster EST : UnigeneHs.654803 [ NCBI ]
CGAP (NCI)Hs.654803
Alternative Splicing GalleryENSG00000162714
Gene ExpressionZNF496 [ NCBI-GEO ]   ZNF496 [ EBI - ARRAY_EXPRESS ]   ZNF496 [ SEEK ]   ZNF496 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF496 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84838
GTEX Portal (Tissue expression)ZNF496
Human Protein AtlasENSG00000162714-ZNF496 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IT1
Splice isoforms : SwissVarQ96IT1
PhosPhoSitePlusQ96IT1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    SCAN_dom    SCAN_sf    Zfp496    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF496
DMDM Disease mutations84838
Blocks (Seattle)ZNF496
SuperfamilyQ96IT1
Human Protein Atlas [tissue]ENSG00000162714-ZNF496 [tissue]
Peptide AtlasQ96IT1
HPRD15805
IPIIPI00063800   IPI00152251   
Protein Interaction databases
DIP (DOE-UCLA)Q96IT1
IntAct (EBI)Q96IT1
FunCoupENSG00000162714
BioGRIDZNF496
STRING (EMBL)ZNF496
ZODIACZNF496
Ontologies - Pathways
QuickGOQ96IT1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding  DNA binding  DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  nuclear body  protein self-association  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding  DNA binding  DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  nuclear body  protein self-association  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF496
Atlas of Cancer Signalling NetworkZNF496
Wikipedia pathwaysZNF496
Orthology - Evolution
OrthoDB84838
GeneTree (enSembl)ENSG00000162714
Phylogenetic Trees/Animal Genes : TreeFamZNF496
HOVERGENQ96IT1
HOGENOMQ96IT1
Homologs : HomoloGeneZNF496
Homology/Alignments : Family Browser (UCSC)ZNF496
Gene fusions - Rearrangements
Fusion : MitelmanZNF496/ZC2HC1B [1q44/6q24.2]  
Fusion : QuiverZNF496
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF496 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF496
dbVarZNF496
ClinVarZNF496
1000_GenomesZNF496 
Exome Variant ServerZNF496
ExAC (Exome Aggregation Consortium)ENSG00000162714
GNOMAD BrowserENSG00000162714
Varsome BrowserZNF496
Genetic variants : HAPMAP84838
Genomic Variants (DGV)ZNF496 [DGVbeta]
DECIPHERZNF496 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF496 
Mutations
ICGC Data PortalZNF496 
TCGA Data PortalZNF496 
Broad Tumor PortalZNF496
OASIS PortalZNF496 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF496  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF496
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF496
DgiDB (Drug Gene Interaction Database)ZNF496
DoCM (Curated mutations)ZNF496 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF496 (select a term)
intoGenZNF496
Cancer3DZNF496(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613911   
Orphanet
DisGeNETZNF496
MedgenZNF496
Genetic Testing Registry ZNF496
NextProtQ96IT1 [Medical]
TSGene84838
GENETestsZNF496
Target ValidationZNF496
Huge Navigator ZNF496 [HugePedia]
snp3D : Map Gene to Disease84838
BioCentury BCIQZNF496
ClinGenZNF496
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84838
Chemical/Pharm GKB GenePA134888470
Clinical trialZNF496
Miscellaneous
canSAR (ICR)ZNF496 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF496
EVEXZNF496
GoPubMedZNF496
iHOPZNF496
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:43:03 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.