Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF497 (zinc finger protein 497)

Identity

Alias_symbol (synonym)FLJ44773
Other alias-
HGNC (Hugo) ZNF497
LocusID (NCBI) 162968
Atlas_Id 76187
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58354357 and ends at 58362848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF497   23714
Cards
Entrez_Gene (NCBI)ZNF497  162968  zinc finger protein 497
Aliases
GeneCards (Weizmann)ZNF497
Ensembl hg19 (Hinxton)ENSG00000174586 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174586 [Gene_View]  chr19:58354357-58362848 [Contig_View]  ZNF497 [Vega]
ICGC DataPortalENSG00000174586
TCGA cBioPortalZNF497
AceView (NCBI)ZNF497
Genatlas (Paris)ZNF497
WikiGenes162968
SOURCE (Princeton)ZNF497
Genetics Home Reference (NIH)ZNF497
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF497  -     chr19:58354357-58362848 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF497  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF497 - 19q13.43 [CytoView hg19]  ZNF497 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF497 [Mapview hg19]  ZNF497 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085829 AK126727 AK131209 BC118983 BC125273
RefSeq transcript (Entrez)NM_001207009 NM_198458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF497
Cluster EST : UnigeneHs.447840 [ NCBI ]
CGAP (NCI)Hs.447840
Alternative Splicing GalleryENSG00000174586
Gene ExpressionZNF497 [ NCBI-GEO ]   ZNF497 [ EBI - ARRAY_EXPRESS ]   ZNF497 [ SEEK ]   ZNF497 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF497 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162968
GTEX Portal (Tissue expression)ZNF497
Human Protein AtlasENSG00000174586-ZNF497 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNH5
Splice isoforms : SwissVarQ6ZNH5
PhosPhoSitePlusQ6ZNH5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF497
DMDM Disease mutations162968
Blocks (Seattle)ZNF497
SuperfamilyQ6ZNH5
Human Protein Atlas [tissue]ENSG00000174586-ZNF497 [tissue]
Peptide AtlasQ6ZNH5
HPRD15806
IPIIPI00418614   IPI00872591   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNH5
IntAct (EBI)Q6ZNH5
FunCoupENSG00000174586
BioGRIDZNF497
STRING (EMBL)ZNF497
ZODIACZNF497
Ontologies - Pathways
QuickGOQ6ZNH5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF497
Atlas of Cancer Signalling NetworkZNF497
Wikipedia pathwaysZNF497
Orthology - Evolution
OrthoDB162968
GeneTree (enSembl)ENSG00000174586
Phylogenetic Trees/Animal Genes : TreeFamZNF497
HOVERGENQ6ZNH5
HOGENOMQ6ZNH5
Homologs : HomoloGeneZNF497
Homology/Alignments : Family Browser (UCSC)ZNF497
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF497
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF497 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF497
dbVarZNF497
ClinVarZNF497
1000_GenomesZNF497 
Exome Variant ServerZNF497
ExAC (Exome Aggregation Consortium)ENSG00000174586
GNOMAD BrowserENSG00000174586
Genetic variants : HAPMAP162968
Genomic Variants (DGV)ZNF497 [DGVbeta]
DECIPHERZNF497 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF497 
Mutations
ICGC Data PortalZNF497 
TCGA Data PortalZNF497 
Broad Tumor PortalZNF497
OASIS PortalZNF497 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF497  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF497
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF497
DgiDB (Drug Gene Interaction Database)ZNF497
DoCM (Curated mutations)ZNF497 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF497 (select a term)
intoGenZNF497
Cancer3DZNF497(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF497
Genetic Testing Registry ZNF497
NextProtQ6ZNH5 [Medical]
TSGene162968
GENETestsZNF497
Target ValidationZNF497
Huge Navigator ZNF497 [HugePedia]
snp3D : Map Gene to Disease162968
BioCentury BCIQZNF497
ClinGenZNF497
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162968
Chemical/Pharm GKB GenePA134994387
Clinical trialZNF497
Miscellaneous
canSAR (ICR)ZNF497 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF497
EVEXZNF497
GoPubMedZNF497
iHOPZNF497
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.