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ZNF500 (zinc finger protein 500)

Identity

Alias_symbol (synonym)ZKSCAN18
KIAA0557
ZSCAN50
Other alias
HGNC (Hugo) ZNF500
LocusID (NCBI) 26048
Atlas_Id 76188
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4750814 and ends at 4767218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CREBBP (16p13.3) / ZNF500 (16p13.3)ZNF500 (16p13.3) / MMP25 (16p13.3)ZNF500 (16p13.3) / SEPT12 (16p13.3)
ZNF500 (16p13.3) / THOC2 (Xq25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF500   23716
Cards
Entrez_Gene (NCBI)ZNF500  26048  zinc finger protein 500
AliasesZKSCAN18; ZSCAN50
GeneCards (Weizmann)ZNF500
Ensembl hg19 (Hinxton)ENSG00000103199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103199 [Gene_View]  chr16:4750814-4767218 [Contig_View]  ZNF500 [Vega]
ICGC DataPortalENSG00000103199
TCGA cBioPortalZNF500
AceView (NCBI)ZNF500
Genatlas (Paris)ZNF500
WikiGenes26048
SOURCE (Princeton)ZNF500
Genetics Home Reference (NIH)ZNF500
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF500  -     chr16:4750814-4767218 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF500  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF500 - 16p13.3 [CytoView hg19]  ZNF500 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF500 [Mapview hg19]  ZNF500 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA236649 AB011129 AF007129 AK291792 AK297993
RefSeq transcript (Entrez)NM_001303450 NM_021646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF500
Cluster EST : UnigeneHs.513316 [ NCBI ]
CGAP (NCI)Hs.513316
Alternative Splicing GalleryENSG00000103199
Gene ExpressionZNF500 [ NCBI-GEO ]   ZNF500 [ EBI - ARRAY_EXPRESS ]   ZNF500 [ SEEK ]   ZNF500 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF500 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26048
GTEX Portal (Tissue expression)ZNF500
Human Protein AtlasENSG00000103199-ZNF500 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60304
Splice isoforms : SwissVarO60304
PhosPhoSitePlusO60304
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF500
DMDM Disease mutations26048
Blocks (Seattle)ZNF500
SuperfamilyO60304
Human Protein Atlas [tissue]ENSG00000103199-ZNF500 [tissue]
Peptide AtlasO60304
HPRD18347
IPIIPI00027967   IPI01011148   
Protein Interaction databases
DIP (DOE-UCLA)O60304
IntAct (EBI)O60304
FunCoupENSG00000103199
BioGRIDZNF500
STRING (EMBL)ZNF500
ZODIACZNF500
Ontologies - Pathways
QuickGOO60304
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF500
Atlas of Cancer Signalling NetworkZNF500
Wikipedia pathwaysZNF500
Orthology - Evolution
OrthoDB26048
GeneTree (enSembl)ENSG00000103199
Phylogenetic Trees/Animal Genes : TreeFamZNF500
HOVERGENO60304
HOGENOMO60304
Homologs : HomoloGeneZNF500
Homology/Alignments : Family Browser (UCSC)ZNF500
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF500
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF500 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF500
dbVarZNF500
ClinVarZNF500
1000_GenomesZNF500 
Exome Variant ServerZNF500
ExAC (Exome Aggregation Consortium)ENSG00000103199
GNOMAD BrowserENSG00000103199
Genetic variants : HAPMAP26048
Genomic Variants (DGV)ZNF500 [DGVbeta]
DECIPHERZNF500 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF500 
Mutations
ICGC Data PortalZNF500 
TCGA Data PortalZNF500 
Broad Tumor PortalZNF500
OASIS PortalZNF500 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF500  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF500
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF500
DgiDB (Drug Gene Interaction Database)ZNF500
DoCM (Curated mutations)ZNF500 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF500 (select a term)
intoGenZNF500
Cancer3DZNF500(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF500
Genetic Testing Registry ZNF500
NextProtO60304 [Medical]
TSGene26048
GENETestsZNF500
Target ValidationZNF500
Huge Navigator ZNF500 [HugePedia]
snp3D : Map Gene to Disease26048
BioCentury BCIQZNF500
ClinGenZNF500
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26048
Chemical/Pharm GKB GenePA134969305
Clinical trialZNF500
Miscellaneous
canSAR (ICR)ZNF500 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF500
EVEXZNF500
GoPubMedZNF500
iHOPZNF500
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:13 CET 2017

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