Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF501 (zinc finger protein 501)

Identity

Alias_namesZNF52
zinc finger protein 52
Alias_symbol (synonym)MGC21738
Other aliasZNF
HGNC (Hugo) ZNF501
LocusID (NCBI) 115560
Atlas_Id 76189
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44729606 and ends at 44737083 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF501   23717
Cards
Entrez_Gene (NCBI)ZNF501  115560  zinc finger protein 501
AliasesZNF; ZNF52
GeneCards (Weizmann)ZNF501
Ensembl hg19 (Hinxton)ENSG00000186446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186446 [Gene_View]  chr3:44729606-44737083 [Contig_View]  ZNF501 [Vega]
ICGC DataPortalENSG00000186446
TCGA cBioPortalZNF501
AceView (NCBI)ZNF501
Genatlas (Paris)ZNF501
WikiGenes115560
SOURCE (Princeton)ZNF501
Genetics Home Reference (NIH)ZNF501
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF501  -     chr3:44729606-44737083 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF501  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF501 - 3p21.31 [CytoView hg19]  ZNF501 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF501 [Mapview hg19]  ZNF501 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054613 AK297216 AK316574 BC013762 BP368765
RefSeq transcript (Entrez)NM_001258280 NM_145044
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF501
Cluster EST : UnigeneHs.401045 [ NCBI ]
CGAP (NCI)Hs.401045
Alternative Splicing GalleryENSG00000186446
Gene ExpressionZNF501 [ NCBI-GEO ]   ZNF501 [ EBI - ARRAY_EXPRESS ]   ZNF501 [ SEEK ]   ZNF501 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF501 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115560
GTEX Portal (Tissue expression)ZNF501
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CX3
Splice isoforms : SwissVarQ96CX3
PhosPhoSitePlusQ96CX3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF501
DMDM Disease mutations115560
Blocks (Seattle)ZNF501
SuperfamilyQ96CX3
Human Protein AtlasENSG00000186446
Peptide AtlasQ96CX3
HPRD15809
IPIIPI00060716   IPI00410286   IPI00952723   
Protein Interaction databases
DIP (DOE-UCLA)Q96CX3
IntAct (EBI)Q96CX3
FunCoupENSG00000186446
BioGRIDZNF501
STRING (EMBL)ZNF501
ZODIACZNF501
Ontologies - Pathways
QuickGOQ96CX3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF501
Atlas of Cancer Signalling NetworkZNF501
Wikipedia pathwaysZNF501
Orthology - Evolution
OrthoDB115560
GeneTree (enSembl)ENSG00000186446
Phylogenetic Trees/Animal Genes : TreeFamZNF501
HOVERGENQ96CX3
HOGENOMQ96CX3
Homologs : HomoloGeneZNF501
Homology/Alignments : Family Browser (UCSC)ZNF501
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF501 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF501
dbVarZNF501
ClinVarZNF501
1000_GenomesZNF501 
Exome Variant ServerZNF501
ExAC (Exome Aggregation Consortium)ZNF501 (select the gene name)
Genetic variants : HAPMAP115560
Genomic Variants (DGV)ZNF501 [DGVbeta]
DECIPHERZNF501 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF501 
Mutations
ICGC Data PortalZNF501 
TCGA Data PortalZNF501 
Broad Tumor PortalZNF501
OASIS PortalZNF501 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF501  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF501
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF501
DgiDB (Drug Gene Interaction Database)ZNF501
DoCM (Curated mutations)ZNF501 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF501 (select a term)
intoGenZNF501
Cancer3DZNF501(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF501
Genetic Testing Registry ZNF501
NextProtQ96CX3 [Medical]
TSGene115560
GENETestsZNF501
Target ValidationZNF501
Huge Navigator ZNF501 [HugePedia]
snp3D : Map Gene to Disease115560
BioCentury BCIQZNF501
ClinGenZNF501
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115560
Chemical/Pharm GKB GenePA134959192
Clinical trialZNF501
Miscellaneous
canSAR (ICR)ZNF501 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF501
EVEXZNF501
GoPubMedZNF501
iHOPZNF501
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.