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ZNF506 (zinc finger protein 506)

Identity

Alias_symbol (synonym)DKFZp761G1812
Other alias-
HGNC (Hugo) ZNF506
LocusID (NCBI) 440515
Atlas_Id 76194
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19792711 and ends at 19821751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSRNP1 (3p22.2) / ZNF506 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF506   23780
Cards
Entrez_Gene (NCBI)ZNF506  440515  zinc finger protein 506
Aliases
GeneCards (Weizmann)ZNF506
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:19792711-19821751 [Contig_View]  ZNF506 [Vega]
TCGA cBioPortalZNF506
AceView (NCBI)ZNF506
Genatlas (Paris)ZNF506
WikiGenes440515
SOURCE (Princeton)ZNF506
Genetics Home Reference (NIH)ZNF506
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF506  -     chr19:19792711-19821751 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF506  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblZNF506 - 19p13.11 [CytoView hg19]  ZNF506 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF506 [Mapview hg19]  ZNF506 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209500 AI559570 AK095575 AK122848 AL136548
RefSeq transcript (Entrez)NM_001099269 NM_001145404 NM_001145405
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF506
Cluster EST : UnigeneHs.351906 [ NCBI ]
CGAP (NCI)Hs.351906
Gene ExpressionZNF506 [ NCBI-GEO ]   ZNF506 [ EBI - ARRAY_EXPRESS ]   ZNF506 [ SEEK ]   ZNF506 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF506 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440515
GTEX Portal (Tissue expression)ZNF506
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JVG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JVG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JVG8
Splice isoforms : SwissVarQ5JVG8
PhosPhoSitePlusQ5JVG8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF506
DMDM Disease mutations440515
Blocks (Seattle)ZNF506
SuperfamilyQ5JVG8
Peptide AtlasQ5JVG8
IPIIPI00984920   IPI00922403   IPI00553009   
Protein Interaction databases
DIP (DOE-UCLA)Q5JVG8
IntAct (EBI)Q5JVG8
BioGRIDZNF506
STRING (EMBL)ZNF506
ZODIACZNF506
Ontologies - Pathways
QuickGOQ5JVG8
Ontology : AmiGODNA binding  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF506
Atlas of Cancer Signalling NetworkZNF506
Wikipedia pathwaysZNF506
Orthology - Evolution
OrthoDB440515
Phylogenetic Trees/Animal Genes : TreeFamZNF506
HOVERGENQ5JVG8
HOGENOMQ5JVG8
Homologs : HomoloGeneZNF506
Homology/Alignments : Family Browser (UCSC)ZNF506
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF506 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF506
dbVarZNF506
ClinVarZNF506
1000_GenomesZNF506 
Exome Variant ServerZNF506
ExAC (Exome Aggregation Consortium)ZNF506 (select the gene name)
Genetic variants : HAPMAP440515
Genomic Variants (DGV)ZNF506 [DGVbeta]
DECIPHERZNF506 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF506 
Mutations
ICGC Data PortalZNF506 
TCGA Data PortalZNF506 
Broad Tumor PortalZNF506
OASIS PortalZNF506 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF506  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF506
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF506
DgiDB (Drug Gene Interaction Database)ZNF506
DoCM (Curated mutations)ZNF506 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF506 (select a term)
intoGenZNF506
Cancer3DZNF506(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF506
Genetic Testing Registry ZNF506
NextProtQ5JVG8 [Medical]
TSGene440515
GENETestsZNF506
Target ValidationZNF506
Huge Navigator ZNF506 [HugePedia]
snp3D : Map Gene to Disease440515
BioCentury BCIQZNF506
ClinGenZNF506
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440515
Chemical/Pharm GKB GenePA134884301
Clinical trialZNF506
Miscellaneous
canSAR (ICR)ZNF506 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF506
EVEXZNF506
GoPubMedZNF506
iHOPZNF506
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:51 CEST 2017

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