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ZNF511 (zinc finger protein 511)

Identity

Alias_symbol (synonym)MGC30006
Other alias-
HGNC (Hugo) ZNF511
LocusID (NCBI) 118472
Atlas_Id 76196
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 135122393 and ends at 135126666 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LY6E (8q24.3) / ZNF511 (10q26.3)MTG1 (10q26.3) / ZNF511 (10q26.3)ZNF511 (10q26.3) / EZR (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF511   28445
Cards
Entrez_Gene (NCBI)ZNF511  118472  zinc finger protein 511
Aliases
GeneCards (Weizmann)ZNF511
Ensembl hg19 (Hinxton) [Gene_View]  chr10:135122393-135126666 [Contig_View]  ZNF511 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:135122393-135126666 [Contig_View]  ZNF511 [Vega]
TCGA cBioPortalZNF511
AceView (NCBI)ZNF511
Genatlas (Paris)ZNF511
WikiGenes118472
SOURCE (Princeton)ZNF511
Genetics Home Reference (NIH)ZNF511
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF511  -     chr10:135122393-135126666 +  10q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF511  -     10q26.3   [Description]    (hg38-Dec_2013)
EnsemblZNF511 - 10q26.3 [CytoView hg19]  ZNF511 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIZNF511 [Mapview hg19]  ZNF511 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091711 AK292380 AL530248 BC015139 BC019897
RefSeq transcript (Entrez)NM_145806
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929377
Consensus coding sequences : CCDS (NCBI)ZNF511
Cluster EST : UnigeneHs.422113 [ NCBI ]
CGAP (NCI)Hs.422113
Gene ExpressionZNF511 [ NCBI-GEO ]   ZNF511 [ EBI - ARRAY_EXPRESS ]   ZNF511 [ SEEK ]   ZNF511 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF511 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118472
GTEX Portal (Tissue expression)ZNF511
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB15
Splice isoforms : SwissVarQ8NB15
PhosPhoSitePlusQ8NB15
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF511
DMDM Disease mutations118472
Blocks (Seattle)ZNF511
SuperfamilyQ8NB15
Peptide AtlasQ8NB15
HPRD15812
IPIIPI00184032   IPI00479134   IPI00939511   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB15
IntAct (EBI)Q8NB15
BioGRIDZNF511
STRING (EMBL)ZNF511
ZODIACZNF511
Ontologies - Pathways
QuickGOQ8NB15
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF511
Atlas of Cancer Signalling NetworkZNF511
Wikipedia pathwaysZNF511
Orthology - Evolution
OrthoDB118472
Phylogenetic Trees/Animal Genes : TreeFamZNF511
HOVERGENQ8NB15
HOGENOMQ8NB15
Homologs : HomoloGeneZNF511
Homology/Alignments : Family Browser (UCSC)ZNF511
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF511 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF511
dbVarZNF511
ClinVarZNF511
1000_GenomesZNF511 
Exome Variant ServerZNF511
ExAC (Exome Aggregation Consortium)ZNF511 (select the gene name)
Genetic variants : HAPMAP118472
Genomic Variants (DGV)ZNF511 [DGVbeta]
DECIPHER (Syndromes)10:135122393-135126666  
CONAN: Copy Number AnalysisZNF511 
Mutations
ICGC Data PortalZNF511 
TCGA Data PortalZNF511 
Broad Tumor PortalZNF511
OASIS PortalZNF511 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF511  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF511
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF511
DgiDB (Drug Gene Interaction Database)ZNF511
DoCM (Curated mutations)ZNF511 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF511 (select a term)
intoGenZNF511
Cancer3DZNF511(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF511
Genetic Testing Registry ZNF511
NextProtQ8NB15 [Medical]
TSGene118472
GENETestsZNF511
Huge Navigator ZNF511 [HugePedia]
snp3D : Map Gene to Disease118472
BioCentury BCIQZNF511
ClinGenZNF511
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118472
Chemical/Pharm GKB GenePA134940031
Clinical trialZNF511
Miscellaneous
canSAR (ICR)ZNF511 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF511
EVEXZNF511
GoPubMedZNF511
iHOPZNF511
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:11 CET 2017

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