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ZNF512B (zinc finger protein 512B)

Identity

Alias_symbol (synonym)GM632
MGC149845
MGC149846
Other alias
HGNC (Hugo) ZNF512B
LocusID (NCBI) 57473
Atlas_Id 76199
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62588057 and ends at 62601223 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NMRAL1 (16p13.3) / ZNF512B (20q13.33)RBM6 (3p21.31) / ZNF512B (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF512B   29212
Cards
Entrez_Gene (NCBI)ZNF512B  57473  zinc finger protein 512B
AliasesGM632
GeneCards (Weizmann)ZNF512B
Ensembl hg19 (Hinxton)ENSG00000196700 [Gene_View]  chr20:62588057-62601223 [Contig_View]  ZNF512B [Vega]
Ensembl hg38 (Hinxton)ENSG00000196700 [Gene_View]  chr20:62588057-62601223 [Contig_View]  ZNF512B [Vega]
ICGC DataPortalENSG00000196700
TCGA cBioPortalZNF512B
AceView (NCBI)ZNF512B
Genatlas (Paris)ZNF512B
WikiGenes57473
SOURCE (Princeton)ZNF512B
Genetics Home Reference (NIH)ZNF512B
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF512B  -     chr20:62588057-62601223 -  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF512B  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblZNF512B - 20q13.33 [CytoView hg19]  ZNF512B - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIZNF512B [Mapview hg19]  ZNF512B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033022 AL834525 AW453003 BC125128 BC125129
RefSeq transcript (Entrez)NM_020713
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)ZNF512B
Cluster EST : UnigeneHs.740578 [ NCBI ]
CGAP (NCI)Hs.740578
Alternative Splicing GalleryENSG00000196700
Gene ExpressionZNF512B [ NCBI-GEO ]   ZNF512B [ EBI - ARRAY_EXPRESS ]   ZNF512B [ SEEK ]   ZNF512B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF512B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57473
GTEX Portal (Tissue expression)ZNF512B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KM6
Splice isoforms : SwissVarQ96KM6
PhosPhoSitePlusQ96KM6
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF512B
DMDM Disease mutations57473
Blocks (Seattle)ZNF512B
PDB (SRS)2GQJ   
PDB (PDBSum)2GQJ   
PDB (IMB)2GQJ   
PDB (RSDB)2GQJ   
Structural Biology KnowledgeBase2GQJ   
SCOP (Structural Classification of Proteins)2GQJ   
CATH (Classification of proteins structures)2GQJ   
SuperfamilyQ96KM6
Human Protein AtlasENSG00000196700
Peptide AtlasQ96KM6
HPRD13840
IPIIPI00074893   
Protein Interaction databases
DIP (DOE-UCLA)Q96KM6
IntAct (EBI)Q96KM6
FunCoupENSG00000196700
BioGRIDZNF512B
STRING (EMBL)ZNF512B
ZODIACZNF512B
Ontologies - Pathways
QuickGOQ96KM6
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF512B
Atlas of Cancer Signalling NetworkZNF512B
Wikipedia pathwaysZNF512B
Orthology - Evolution
OrthoDB57473
GeneTree (enSembl)ENSG00000196700
Phylogenetic Trees/Animal Genes : TreeFamZNF512B
HOVERGENQ96KM6
HOGENOMQ96KM6
Homologs : HomoloGeneZNF512B
Homology/Alignments : Family Browser (UCSC)ZNF512B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF512B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF512B
dbVarZNF512B
ClinVarZNF512B
1000_GenomesZNF512B 
Exome Variant ServerZNF512B
ExAC (Exome Aggregation Consortium)ZNF512B (select the gene name)
Genetic variants : HAPMAP57473
Genomic Variants (DGV)ZNF512B [DGVbeta]
DECIPHER (Syndromes)20:62588057-62601223  ENSG00000196700
CONAN: Copy Number AnalysisZNF512B 
Mutations
ICGC Data PortalZNF512B 
TCGA Data PortalZNF512B 
Broad Tumor PortalZNF512B
OASIS PortalZNF512B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF512B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF512B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF512B
DgiDB (Drug Gene Interaction Database)ZNF512B
DoCM (Curated mutations)ZNF512B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF512B (select a term)
intoGenZNF512B
Cancer3DZNF512B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF512B
Genetic Testing Registry ZNF512B
NextProtQ96KM6 [Medical]
TSGene57473
GENETestsZNF512B
Huge Navigator ZNF512B [HugePedia]
snp3D : Map Gene to Disease57473
BioCentury BCIQZNF512B
ClinGenZNF512B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57473
Chemical/Pharm GKB GenePA162410181
Clinical trialZNF512B
Miscellaneous
canSAR (ICR)ZNF512B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF512B
EVEXZNF512B
GoPubMedZNF512B
iHOPZNF512B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:12 CET 2017

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