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ZNF513 (zinc finger protein 513)

Identity

Alias_symbol (synonym)FLJ32203
RP58
Other aliasHMFT0656
HGNC (Hugo) ZNF513
LocusID (NCBI) 130557
Atlas_Id 76200
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27377231 and ends at 27380444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF513 (2p23.3) / ZNF513 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF513   26498
Cards
Entrez_Gene (NCBI)ZNF513  130557  zinc finger protein 513
AliasesHMFT0656; RP58
GeneCards (Weizmann)ZNF513
Ensembl hg19 (Hinxton)ENSG00000163795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163795 [Gene_View]  chr2:27377231-27380444 [Contig_View]  ZNF513 [Vega]
ICGC DataPortalENSG00000163795
TCGA cBioPortalZNF513
AceView (NCBI)ZNF513
Genatlas (Paris)ZNF513
WikiGenes130557
SOURCE (Princeton)ZNF513
Genetics Home Reference (NIH)ZNF513
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF513  -     chr2:27377231-27380444 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF513  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblZNF513 - 2p23.3 [CytoView hg19]  ZNF513 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIZNF513 [Mapview hg19]  ZNF513 [Mapview hg38]
OMIM613598   613617   
Gene and transcription
Genbank (Entrez)AB075875 AI766724 AK056765 AK096933 AK290690
RefSeq transcript (Entrez)NM_001201459 NM_144631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF513
Cluster EST : UnigeneHs.515872 [ NCBI ]
CGAP (NCI)Hs.515872
Alternative Splicing GalleryENSG00000163795
Gene ExpressionZNF513 [ NCBI-GEO ]   ZNF513 [ EBI - ARRAY_EXPRESS ]   ZNF513 [ SEEK ]   ZNF513 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF513 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130557
GTEX Portal (Tissue expression)ZNF513
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8E2
Splice isoforms : SwissVarQ8N8E2
PhosPhoSitePlusQ8N8E2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF513
DMDM Disease mutations130557
Blocks (Seattle)ZNF513
SuperfamilyQ8N8E2
Human Protein AtlasENSG00000163795
Peptide AtlasQ8N8E2
HPRD15813
IPIIPI00328854   IPI00892763   IPI00914598   IPI00893490   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8E2
IntAct (EBI)Q8N8E2
FunCoupENSG00000163795
BioGRIDZNF513
STRING (EMBL)ZNF513
ZODIACZNF513
Ontologies - Pathways
QuickGOQ8N8E2
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  visual perception  transcription regulatory region DNA binding  metal ion binding  response to stimulus  retina development in camera-type eye  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  visual perception  transcription regulatory region DNA binding  metal ion binding  response to stimulus  retina development in camera-type eye  
NDEx NetworkZNF513
Atlas of Cancer Signalling NetworkZNF513
Wikipedia pathwaysZNF513
Orthology - Evolution
OrthoDB130557
GeneTree (enSembl)ENSG00000163795
Phylogenetic Trees/Animal Genes : TreeFamZNF513
HOVERGENQ8N8E2
HOGENOMQ8N8E2
Homologs : HomoloGeneZNF513
Homology/Alignments : Family Browser (UCSC)ZNF513
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF513 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF513
dbVarZNF513
ClinVarZNF513
1000_GenomesZNF513 
Exome Variant ServerZNF513
ExAC (Exome Aggregation Consortium)ZNF513 (select the gene name)
Genetic variants : HAPMAP130557
Genomic Variants (DGV)ZNF513 [DGVbeta]
DECIPHERZNF513 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF513 
Mutations
ICGC Data PortalZNF513 
TCGA Data PortalZNF513 
Broad Tumor PortalZNF513
OASIS PortalZNF513 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF513  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF513
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch ZNF513
DgiDB (Drug Gene Interaction Database)ZNF513
DoCM (Curated mutations)ZNF513 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF513 (select a term)
intoGenZNF513
Cancer3DZNF513(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613598    613617   
Orphanet659   
MedgenZNF513
Genetic Testing Registry ZNF513
NextProtQ8N8E2 [Medical]
TSGene130557
GENETestsZNF513
Target ValidationZNF513
Huge Navigator ZNF513 [HugePedia]
snp3D : Map Gene to Disease130557
BioCentury BCIQZNF513
ClinGenZNF513
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130557
Chemical/Pharm GKB GenePA134872812
Clinical trialZNF513
Miscellaneous
canSAR (ICR)ZNF513 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF513
EVEXZNF513
GoPubMedZNF513
iHOPZNF513
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:51 CEST 2017

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