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ZNF516 (zinc finger protein 516)

Identity

Alias_symbol (synonym)HsT287
KIAA0222
Other alias
HGNC (Hugo) ZNF516
LocusID (NCBI) 9658
Atlas_Id 76202
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 76357682 and ends at 76495190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP9B (18q23) / ZNF516 (18q23)KIAA0922 (4q31.3) / ZNF516 (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF516   28990
Cards
Entrez_Gene (NCBI)ZNF516  9658  zinc finger protein 516
AliasesHsT287
GeneCards (Weizmann)ZNF516
Ensembl hg19 (Hinxton)ENSG00000101493 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101493 [Gene_View]  chr18:76357682-76495190 [Contig_View]  ZNF516 [Vega]
ICGC DataPortalENSG00000101493
TCGA cBioPortalZNF516
AceView (NCBI)ZNF516
Genatlas (Paris)ZNF516
WikiGenes9658
SOURCE (Princeton)ZNF516
Genetics Home Reference (NIH)ZNF516
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF516  -     chr18:76357682-76495190 -  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF516  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblZNF516 - 18q23 [CytoView hg19]  ZNF516 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIZNF516 [Mapview hg19]  ZNF516 [Mapview hg38]
OMIM615114   
Gene and transcription
Genbank (Entrez)BC108287 BC113085 BC113086 BC128041 D16475
RefSeq transcript (Entrez)NM_014643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF516
Cluster EST : UnigeneHs.436973 [ NCBI ]
CGAP (NCI)Hs.436973
Alternative Splicing GalleryENSG00000101493
Gene ExpressionZNF516 [ NCBI-GEO ]   ZNF516 [ EBI - ARRAY_EXPRESS ]   ZNF516 [ SEEK ]   ZNF516 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF516 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9658
GTEX Portal (Tissue expression)ZNF516
Human Protein AtlasENSG00000101493-ZNF516 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92618   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92618  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92618
Splice isoforms : SwissVarQ92618
PhosPhoSitePlusQ92618
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF516
DMDM Disease mutations9658
Blocks (Seattle)ZNF516
SuperfamilyQ92618
Human Protein Atlas [tissue]ENSG00000101493-ZNF516 [tissue]
Peptide AtlasQ92618
IPIIPI00852669   IPI01012015   
Protein Interaction databases
DIP (DOE-UCLA)Q92618
IntAct (EBI)Q92618
FunCoupENSG00000101493
BioGRIDZNF516
STRING (EMBL)ZNF516
ZODIACZNF516
Ontologies - Pathways
QuickGOQ92618
Ontology : AmiGOcore promoter proximal region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  response to cold  activating transcription factor binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  brown fat cell differentiation  adipose tissue development  
Ontology : EGO-EBIcore promoter proximal region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  response to cold  activating transcription factor binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  brown fat cell differentiation  adipose tissue development  
NDEx NetworkZNF516
Atlas of Cancer Signalling NetworkZNF516
Wikipedia pathwaysZNF516
Orthology - Evolution
OrthoDB9658
GeneTree (enSembl)ENSG00000101493
Phylogenetic Trees/Animal Genes : TreeFamZNF516
HOVERGENQ92618
HOGENOMQ92618
Homologs : HomoloGeneZNF516
Homology/Alignments : Family Browser (UCSC)ZNF516
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF516
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF516 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF516
dbVarZNF516
ClinVarZNF516
1000_GenomesZNF516 
Exome Variant ServerZNF516
ExAC (Exome Aggregation Consortium)ENSG00000101493
GNOMAD BrowserENSG00000101493
Genetic variants : HAPMAP9658
Genomic Variants (DGV)ZNF516 [DGVbeta]
DECIPHERZNF516 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF516 
Mutations
ICGC Data PortalZNF516 
TCGA Data PortalZNF516 
Broad Tumor PortalZNF516
OASIS PortalZNF516 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF516  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF516
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF516
DgiDB (Drug Gene Interaction Database)ZNF516
DoCM (Curated mutations)ZNF516 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF516 (select a term)
intoGenZNF516
Cancer3DZNF516(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615114   
Orphanet
MedgenZNF516
Genetic Testing Registry ZNF516
NextProtQ92618 [Medical]
TSGene9658
GENETestsZNF516
Target ValidationZNF516
Huge Navigator ZNF516 [HugePedia]
snp3D : Map Gene to Disease9658
BioCentury BCIQZNF516
ClinGenZNF516
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9658
Chemical/Pharm GKB GenePA134992707
Clinical trialZNF516
Miscellaneous
canSAR (ICR)ZNF516 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF516
EVEXZNF516
GoPubMedZNF516
iHOPZNF516
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:37:16 CET 2017

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