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ZNF517 (zinc finger protein 517)

Identity

Other alias-
HGNC (Hugo) ZNF517
LocusID (NCBI) 340385
Atlas_Id 76203
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 146024261 and ends at 146034529 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF517   27984
Cards
Entrez_Gene (NCBI)ZNF517  340385  zinc finger protein 517
Aliases
GeneCards (Weizmann)ZNF517
Ensembl hg19 (Hinxton)ENSG00000197363 [Gene_View]  chr8:146024261-146034529 [Contig_View]  ZNF517 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197363 [Gene_View]  chr8:146024261-146034529 [Contig_View]  ZNF517 [Vega]
ICGC DataPortalENSG00000197363
TCGA cBioPortalZNF517
AceView (NCBI)ZNF517
Genatlas (Paris)ZNF517
WikiGenes340385
SOURCE (Princeton)ZNF517
Genetics Home Reference (NIH)ZNF517
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF517  -     chr8:146024261-146034529 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF517  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblZNF517 - 8q24.3 [CytoView hg19]  ZNF517 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF517 [Mapview hg19]  ZNF517 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096527 AK097278 AK131440 BC126161 BC143922
RefSeq transcript (Entrez)NM_213605
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929341
Consensus coding sequences : CCDS (NCBI)ZNF517
Cluster EST : UnigeneHs.521942 [ NCBI ]
CGAP (NCI)Hs.521942
Alternative Splicing GalleryENSG00000197363
Gene ExpressionZNF517 [ NCBI-GEO ]   ZNF517 [ EBI - ARRAY_EXPRESS ]   ZNF517 [ SEEK ]   ZNF517 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF517 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340385
GTEX Portal (Tissue expression)ZNF517
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMY9
Splice isoforms : SwissVarQ6ZMY9
PhosPhoSitePlusQ6ZMY9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF517
DMDM Disease mutations340385
Blocks (Seattle)ZNF517
SuperfamilyQ6ZMY9
Human Protein AtlasENSG00000197363
Peptide AtlasQ6ZMY9
HPRD15815
IPIIPI00412701   IPI00984158   IPI00985455   IPI00981160   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMY9
IntAct (EBI)Q6ZMY9
FunCoupENSG00000197363
BioGRIDZNF517
STRING (EMBL)ZNF517
ZODIACZNF517
Ontologies - Pathways
QuickGOQ6ZMY9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF517
Atlas of Cancer Signalling NetworkZNF517
Wikipedia pathwaysZNF517
Orthology - Evolution
OrthoDB340385
GeneTree (enSembl)ENSG00000197363
Phylogenetic Trees/Animal Genes : TreeFamZNF517
HOVERGENQ6ZMY9
HOGENOMQ6ZMY9
Homologs : HomoloGeneZNF517
Homology/Alignments : Family Browser (UCSC)ZNF517
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF517 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF517
dbVarZNF517
ClinVarZNF517
1000_GenomesZNF517 
Exome Variant ServerZNF517
ExAC (Exome Aggregation Consortium)ZNF517 (select the gene name)
Genetic variants : HAPMAP340385
Genomic Variants (DGV)ZNF517 [DGVbeta]
DECIPHER (Syndromes)8:146024261-146034529  ENSG00000197363
CONAN: Copy Number AnalysisZNF517 
Mutations
ICGC Data PortalZNF517 
TCGA Data PortalZNF517 
Broad Tumor PortalZNF517
OASIS PortalZNF517 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF517  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF517
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF517
DgiDB (Drug Gene Interaction Database)ZNF517
DoCM (Curated mutations)ZNF517 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF517 (select a term)
intoGenZNF517
Cancer3DZNF517(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF517
Genetic Testing Registry ZNF517
NextProtQ6ZMY9 [Medical]
TSGene340385
GENETestsZNF517
Huge Navigator ZNF517 [HugePedia]
snp3D : Map Gene to Disease340385
BioCentury BCIQZNF517
ClinGenZNF517
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340385
Chemical/Pharm GKB GenePA134889443
Clinical trialZNF517
Miscellaneous
canSAR (ICR)ZNF517 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF517
EVEXZNF517
GoPubMedZNF517
iHOPZNF517
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:53:12 CET 2017

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