Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF518A (zinc finger protein 518A)

Identity

Alias_namesZNF518
zinc finger protein 518
Alias_symbol (synonym)KIAA0335
Other alias
HGNC (Hugo) ZNF518A
LocusID (NCBI) 9849
Atlas_Id 76204
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96129715 and ends at 96163761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF518A   29009
Cards
Entrez_Gene (NCBI)ZNF518A  9849  zinc finger protein 518A
AliasesZNF518
GeneCards (Weizmann)ZNF518A
Ensembl hg19 (Hinxton)ENSG00000177853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177853 [Gene_View]  ENSG00000177853 [Sequence]  chr10:96129715-96163761 [Contig_View]  ZNF518A [Vega]
ICGC DataPortalENSG00000177853
TCGA cBioPortalZNF518A
AceView (NCBI)ZNF518A
Genatlas (Paris)ZNF518A
WikiGenes9849
SOURCE (Princeton)ZNF518A
Genetics Home Reference (NIH)ZNF518A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF518A  -     chr10:96129715-96163761 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF518A  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblZNF518A - 10q24.1 [CytoView hg19]  ZNF518A - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBIZNF518A [Mapview hg19]  ZNF518A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002333 AK095317 AW514026 BC030967 BC109045
RefSeq transcript (Entrez)NM_001278524 NM_001278525 NM_001278526 NM_001330732 NM_001330733 NM_001330734 NM_001330735 NM_001330736 NM_001330737 NM_001330738 NM_014803
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF518A
Cluster EST : UnigeneHs.651650 [ NCBI ]
CGAP (NCI)Hs.651650
Alternative Splicing GalleryENSG00000177853
Gene ExpressionZNF518A [ NCBI-GEO ]   ZNF518A [ EBI - ARRAY_EXPRESS ]   ZNF518A [ SEEK ]   ZNF518A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF518A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9849
GTEX Portal (Tissue expression)ZNF518A
Human Protein AtlasENSG00000177853-ZNF518A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6AHZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6AHZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6AHZ1
Splice isoforms : SwissVarQ6AHZ1
PhosPhoSitePlusQ6AHZ1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    ZNF518A    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF518A
DMDM Disease mutations9849
Blocks (Seattle)ZNF518A
SuperfamilyQ6AHZ1
Human Protein Atlas [tissue]ENSG00000177853-ZNF518A [tissue]
Peptide AtlasQ6AHZ1
HPRD18349
IPIIPI00307665   IPI00761133   
Protein Interaction databases
DIP (DOE-UCLA)Q6AHZ1
IntAct (EBI)Q6AHZ1
FunCoupENSG00000177853
BioGRIDZNF518A
STRING (EMBL)ZNF518A
ZODIACZNF518A
Ontologies - Pathways
QuickGOQ6AHZ1
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF518A
Atlas of Cancer Signalling NetworkZNF518A
Wikipedia pathwaysZNF518A
Orthology - Evolution
OrthoDB9849
GeneTree (enSembl)ENSG00000177853
Phylogenetic Trees/Animal Genes : TreeFamZNF518A
HOVERGENQ6AHZ1
HOGENOMQ6AHZ1
Homologs : HomoloGeneZNF518A
Homology/Alignments : Family Browser (UCSC)ZNF518A
Gene fusions - Rearrangements
Fusion : QuiverZNF518A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF518A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF518A
dbVarZNF518A
ClinVarZNF518A
1000_GenomesZNF518A 
Exome Variant ServerZNF518A
ExAC (Exome Aggregation Consortium)ENSG00000177853
GNOMAD BrowserENSG00000177853
Varsome BrowserZNF518A
Genetic variants : HAPMAP9849
Genomic Variants (DGV)ZNF518A [DGVbeta]
DECIPHERZNF518A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF518A 
Mutations
ICGC Data PortalZNF518A 
TCGA Data PortalZNF518A 
Broad Tumor PortalZNF518A
OASIS PortalZNF518A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF518A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF518A
DgiDB (Drug Gene Interaction Database)ZNF518A
DoCM (Curated mutations)ZNF518A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF518A (select a term)
intoGenZNF518A
Cancer3DZNF518A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF518A
MedgenZNF518A
Genetic Testing Registry ZNF518A
NextProtQ6AHZ1 [Medical]
TSGene9849
GENETestsZNF518A
Target ValidationZNF518A
Huge Navigator ZNF518A [HugePedia]
snp3D : Map Gene to Disease9849
BioCentury BCIQZNF518A
ClinGenZNF518A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9849
Chemical/Pharm GKB GenePA162410182
Clinical trialZNF518A
Miscellaneous
canSAR (ICR)ZNF518A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF518A
EVEXZNF518A
GoPubMedZNF518A
iHOPZNF518A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:39:57 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.